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Report for Sequence Feature Glyma13g14716

Feature Type:gene_model
Chromosome:Gm13
Start:18265975
stop:18269957
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g14716
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72280AT Annotation by Michelle Graham. TAIR10: endoplasmic reticulum oxidoreductins 1 | chr1:27212039-27214506 REVERSE LENGTH=469 SoyBaseE_val: 2.00E-64ISS
GO:0006984GO-bp Annotation by Michelle Graham. GO Biological Process: ER-nucleus signaling pathway SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005789GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane SoyBaseN/AISS
GO:0003756GO-mf Annotation by Michelle Graham. GO Molecular Function: protein disulfide isomerase activity SoyBaseN/AISS
GO:0016671GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
PTHR12613Panther ERO1-RELATED JGI ISS
PF04137PFAM Endoplasmic Reticulum Oxidoreductin 1 (ERO1) JGI ISS
UniRef100_G7IGL6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmic oxidoreductin-1 n=1 Tax=Medicago truncatula RepID=G7IGL6_MEDTR SoyBaseE_val: 7.00E-79ISS
UniRef100_UPI000233C47AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C47A related cluster n=1 Tax=unknown RepID=UPI000233C47A SoyBaseE_val: 3.00E-120ISS

Expression Patterns of Glyma13g14716
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g14716 not represented in the dataset
Glyma13g14716 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g14716 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g028900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g14716
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g14716
>Glyma13g14716.2   sequence type=transcript   gene model=Glyma13g14716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGACCGAGTCCTAAGATACCCTGATCGTGTTAGAAATTTGTATTTCACTTTTCTCTTTGTTCTACGAGCAGTAACCAAAGCTTCAAATTATCTGGAACAGGCAGAGTATGATACTTGTAACCCCAATGAGAACCTTACAACACAATCCTTGATAAAACAACTAATTTACAACCTCAAGCTTCAAGCTGCATGTCCAATTCCATTTGATGAAGCTAATTTGTGGAAAGGCCGAAGTGGACTTGAGCTAAAACAAAAAATTCAACAACAATTCAGAAACATCAGTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTATGCTTTAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTATTGATGGTAAAATAAACTCGAGTCATACAGTAAGTACATTTTGCTTGAGATTTTTGTGTCTTTCTCTCTTTACTGTTGTCTTTATGCATGTACCATAAATCAGATTGCTTCTGCAGTGATCTTTAAATAATACATTCTTCTTCCATGTTAAATCCTGAACTAAAACATGTATATCTTCCTAAGTTGTAATCTAGTAAGTATTTTGCTCCTACATTTGAAAACATTATGGTTCTTTCATGCAGATAATGGCTAGTATCTGCATCATATAATGTTAAATTTTCTTGTTAAATACAAATTAAATCATACAACTAGACATGGACGATCAAAGATTATAAGGTAGTTTGTAGTTAC
Coding sequences of Glyma13g14716
>Glyma13g14716.1   sequence type=CDS   gene model=Glyma13g14716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCTAAGATACCCTGATCGTGTTAGAAATTTGTATTTCACTTTTCTCTTTGTTCTACGAGCAGTAACCAAAGCTTCAAATTATCTGGAACAGGCAGAGTATGATACTTGTAACCCCAATGAGAACCTTACAACACAATCCTTGATAAAACAACTAATTTACAACCTCAAGCTTCAAGCTGCATGTCCAATTCCATTTGATGAAGCTAATTTGTGGAAAGGCCGAAGTGGACTTGAGCTAAAACAAAAAATTCAACAACAATTCAGAAACATCAGTCCTGTAGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTATTGATGGTAAAATAAACTCGAGTCATACACTGCAGCTGCAAAGGAATAAGGTAATTGCATTGACGAACCTTCTCAATCGACTCTTGGAATCCATCAAATTCAGCCACAAAGTGGGACCTACAGCTGAAAGAAACATTGAAGGAAGACATTTTTCTGCTCATACAAGAACATTGATTAGCTCATGGAAAAAAATTTGGTCCTATGTATCTAAAACTTAG

>Glyma13g14716.2   sequence type=CDS   gene model=Glyma13g14716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGACCGAGTCCTAAGATACCCTGATCGTGTTAGAAATTTGTATTTCACTTTTCTCTTTGTTCTACGAGCAGTAACCAAAGCTTCAAATTATCTGGAACAGGCAGAGTATGATACTTGTAACCCCAATGAGAACCTTACAACACAATCCTTGATAAAACAACTAATTTACAACCTCAAGCTTCAAGCTGCATGTCCAATTCCATTTGATGAAGCTAATTTGTGGAAAGGCCGAAGTGGACTTGAGCTAAAACAAAAAATTCAACAACAATTCAGAAACATCAGTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTATGCTTTAG
Predicted protein sequences of Glyma13g14716
>Glyma13g14716.1   sequence type=predicted peptide   gene model=Glyma13g14716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLRYPDRVRNLYFTFLFVLRAVTKASNYLEQAEYDTCNPNENLTTQSLIKQLIYNLKLQAACPIPFDEANLWKGRSGLELKQKIQQQFRNISPVVLGLGTALKILFSIDGKINSSHTLQLQRNKVIALTNLLNRLLESIKFSHKVGPTAERNIEGRHFSAHTRTLISSWKKIWSYVSKT*

>Glyma13g14716.2   sequence type=predicted peptide   gene model=Glyma13g14716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYDRVLRYPDRVRNLYFTFLFVLRAVTKASNYLEQAEYDTCNPNENLTTQSLIKQLIYNLKLQAACPIPFDEANLWKGRSGLELKQKIQQQFRNISALMDCVGCEKCRLWGML*






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