SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma13g14263

Feature Type:gene_model
Chromosome:Gm13
Start:18050792
stop:18055768
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51690AT Annotation by Michelle Graham. TAIR10: PIF1 helicase | chr3:19176731-19178107 REVERSE LENGTH=331 SoyBaseE_val: 2.00E-45ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0987 KOG DNA helicase PIF1/RRM3 JGI ISS
PTHR10492Panther HELICASE-RELATED JGI ISS
PF05970PFAM PIF1 helicase JGI ISS
UniRef100_G7JLV8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Helicase-like protein n=1 Tax=Medicago truncatula RepID=G7JLV8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002337699UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337699 related cluster n=1 Tax=unknown RepID=UPI0002337699 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g14263 not represented in the dataset

Glyma13g14263 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g029400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g14263.1   sequence type=CDS   gene model=Glyma13g14263   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCTGATCTTGGTGATCAGCTCATGCAGTGTAGTCACTGTAATGCAAATATGTGGTATGTTGAAAGAGTCTCAAAAGATAAAAGAACTACAAATCCAAGATTCAGTTTATGTTGTGGAAATGGCAAGGTTGAACTTCCATTGTTACAGAATCCACCTAAATATCTCTACCAACTTTTGTATGATCATGGTACACCTGATAGTAAAAATTACCAGCAGAACATAAGGACAAATAACATGATTCGACATAATCAAATTCAAGAACACATTGTTTCACAACTTAGTGAGATGCTAGATGAATACAACGTGCATGCAAAAACTTTCAGGATGGCTAGAGATAGATTGCAAGATGTTCAGGTGAATAATATCAAGTTGAAATTGATTGCTAATCATGAGAAAGATGGTCGTACATATAATGTACCTACTGTTCCTGAAGTTGCAGCACTAATAGTAGGCGATTTTGATGCAAATTCAAAAAGAGATATTATTATTGAAACTCAGCATGGACAACTACAAAGGATCCATGAATTACATTCTAGCTATCTAGCTCTACAATACCCTCTCTTATTTCCTTACGGGGAAGATGGATATAGACCTGATATTTTACATAGCAGTCGGTCAGATGGTAAGAAATGGAAAAGAAATCGTCTTACAATGAGGGAGTGGTTTTCTTATAGGCTACAATGCATATCAAATGAATCTATAACTTTGTTGAATTCTAAGAGACTATTCCAAAAATTTGTTGTTGACGGCTATACTATGGTTGACAAGTTTTGTAGCTTACAACATTCATTGGATAATGGAAGTAGGAGAGGCCTAAATAAAGGTAAAAGAGTCATTTTGCCTTCAACTTTTGTTGGCAGTCCGCGCTATATGGATCAACTTTATTTTGATGGTATGGTCATATGTAGCCATGTGGGCTTCCCAAATCTGTTTATTACTTTAACCTGCAATCAAAACTGGCCTGAAATCCATAGATTGCTGAGTCCGTTGAATCTGAAAGCAGTAGATAGGTCAGACATAATCTCCAGAGTCTTCAAACTAAAGTATGAAAAAATGCTTATTGACCTGACAAAGAATCACATGCTAGGCAAAGTTATTGCATTAAAAAACCATATGGTTCATGGTCCATGTGGAAGTCTGAATCCTGGATCTCCATGCATGAAAAAAGGCAAGTGTAGTCGTTTCTATCCTAAAATGTTCCAGCCGCATACTGTTTTAGATGCTGATGGTTTTCCCGTCTATCGTAGAAGAAACAACGGTAATGCAATTGAGAAAAATGGTGTTATAGTTGATAACAGGTATATTGTACCTTACAATCCAAGATTGCTCAGAAAATACCAAGCGCATATCAATATTGAATGGTGTAACCAAAACACTTCTATCAAATATTTATTTAAGTACATCAACAAGGGATATGATAGAGTGACTGCTGTTTTGATTGATGAAGATAATGATCAAACTGAGAATGGTGGCACGCATAATGATGAGATCAAAGAATATCTAGATTGCAGATACATATGTCCCTGTGAATCTACTTGGAGAATCTTTGGATTTCCAATACATGGCAGAAAACTTGTTGTTGAAAGATTACACTTCCATCTTCCAGGCCAACATAGTGTTCTCTATGAAGACCATGATGATATTGATGATGTATTGTCTAAGCCAAGGAGAAATCTTACTTATGCAGAATTTGTTTCTAAGTTTGTATACAATCAGAAGAAAAGATGTTGGCACCTTAGGAAGAAAGGCTATACCATTGGCAGATTACTATGGGTTCCACCAATTACAGGGGAATTATTTTATTTGAGAATGATGCTTACTGTTTGTAAAGGAGCTACCTCATTTGAGGATTTAAGAACAATCGATAATGTTCAGTATTCTACATATAAAGAATCATGTTTTGCTATGGGATTTTTACAAGATGATAAAGAATTTATTGAGGCAATCAAAGAAGCAAAAGACTGGGGTTCAACACATTATATAAGAAAGCTATTTGTGTTGTTACTTTTAACTGCAACAATGAGCAAACCTGAACAAGTTTGGGACCAAACTTGGCATTGGATGGCTGATGACATTGTCTATAATTATAAAAAATCATCAACAAGTCCAGCATTGCAGCTTGATGATAGAACTCTTCAAAATTTGGTCTTGCTTCAAATTGAAGAACTGCTGCAAGCAAATCAAAGATTGCTAAGAGACTATCCTTCAATGCCATATCCAGAGGATGCGAATTGTCCAGCTTATCTAGACAATAGCCTTATATTAGCTGAACTGAACTACAACAATGAAGAACTTAGATCAGAGTTTGAACATCTATTTTCTCACATGACAGATGAACAAGCTTCAATTTACAACCAGATTGTTGAAGCTGTTAATAAAGATAAAGGTGGTATGTTTTTTCTCTATGGATATGGAGGTACAGGAAAAACATACATTTGGAAAACACTTGCAAGTTCACTAAGAGCTGACAATAAAATTGTAATAATGGTAGCCTCTAGCGGCATAGCTTCTCTACTATTTCCTAGAGGTAGAACTGCACATTCAAAATTTAAAATTCTAGTTCCAGTTTTTGAAGACTCAACTTGCAATATCCATCAAGGAACTCAATTAGCTGAACTATTAAATCAGACAAGTCTAATCATTTGGGATGAAGCACCCATGGCTCACAAATTCTGTTTTGAGGCACTTGATCACAGTCGTAGAGATATCATCAAACACAACTCAAAGGACAATAAAATCTTTGGAGGTAAAGTCATGGTCTTTGGTGGAGATTTCCGGCAGATCCTGCCAGCCATTCCAAGAGGCAGCCGCTCTGATATTGTTAACGCAACAATTGATTCCTCTTATCTATGGGTTCACTGTCAAATCTTGAGACTGACAAAAAACATGTGTTTACAAAACAACATGGAAGCAACAGATCAAGAAGAAATTGCAGCTTTTGCACAATGGATTATAGATATTGGTGATGGTATTATTGGAGATGAAAATGATGGCTATGCTACTATTGAAATTCCACAGGAACTATTAATCACAGAATATAATGATCCTATTCATAGTATAATTAGCTCTACATTTCCAGATCTATCTTGTCATCACAATGATCCTGAATACTTCCAAACCAGAGCAATATTAGCTTCCACAAATGAAACAGTGCAACGAGTTAATGATTATATGCTTACAATGATACCGGGTGAACAAATGGAATATCTAAGCTCTGATTCAGTTGACAAATCCAAAACCATTGAAAGTTGTCATTTCCGCTCACTGTCAACTAAATTTCTGAATTCATTGACAACATCTGGCTTACCCAATCACTGTCTCAAACTCAAGATTGGAACACCAATAATTCTATTAAGGAACTTAGACCAAACTCAAGGGTTGTGTAATGGTACTAGGTTAATTATCACAAAACTAGCAAAACATGTTATTGCAGCTGACATAATTTCTGGGACAAATATCGGAGATCATTTTTATATCCCACGAATGTCTATGTCGCCTTCACAGTCACCATGGCCTTTTAAGCTATTGAGGAGACAATTTCCGATAATGCTTTCTTATGCTATGACAATTAATAAATCCCAAGGACAATCACTATCTTCATTAAAACATCATCAAATGAGCCAATCTATAATTCATTAA

>Glyma13g14263.1   sequence type=predicted peptide   gene model=Glyma13g14263   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FSDLGDQLMQCSHCNANMWYVERVSKDKRTTNPRFSLCCGNGKVELPLLQNPPKYLYQLLYDHGTPDSKNYQQNIRTNNMIRHNQIQEHIVSQLSEMLDEYNVHAKTFRMARDRLQDVQVNNIKLKLIANHEKDGRTYNVPTVPEVAALIVGDFDANSKRDIIIETQHGQLQRIHELHSSYLALQYPLLFPYGEDGYRPDILHSSRSDGKKWKRNRLTMREWFSYRLQCISNESITLLNSKRLFQKFVVDGYTMVDKFCSLQHSLDNGSRRGLNKGKRVILPSTFVGSPRYMDQLYFDGMVICSHVGFPNLFITLTCNQNWPEIHRLLSPLNLKAVDRSDIISRVFKLKYEKMLIDLTKNHMLGKVIALKNHMVHGPCGSLNPGSPCMKKGKCSRFYPKMFQPHTVLDADGFPVYRRRNNGNAIEKNGVIVDNRYIVPYNPRLLRKYQAHINIEWCNQNTSIKYLFKYINKGYDRVTAVLIDEDNDQTENGGTHNDEIKEYLDCRYICPCESTWRIFGFPIHGRKLVVERLHFHLPGQHSVLYEDHDDIDDVLSKPRRNLTYAEFVSKFVYNQKKRCWHLRKKGYTIGRLLWVPPITGELFYLRMMLTVCKGATSFEDLRTIDNVQYSTYKESCFAMGFLQDDKEFIEAIKEAKDWGSTHYIRKLFVLLLLTATMSKPEQVWDQTWHWMADDIVYNYKKSSTSPALQLDDRTLQNLVLLQIEELLQANQRLLRDYPSMPYPEDANCPAYLDNSLILAELNYNNEELRSEFEHLFSHMTDEQASIYNQIVEAVNKDKGGMFFLYGYGGTGKTYIWKTLASSLRADNKIVIMVASSGIASLLFPRGRTAHSKFKILVPVFEDSTCNIHQGTQLAELLNQTSLIIWDEAPMAHKFCFEALDHSRRDIIKHNSKDNKIFGGKVMVFGGDFRQILPAIPRGSRSDIVNATIDSSYLWVHCQILRLTKNMCLQNNMEATDQEEIAAFAQWIIDIGDGIIGDENDGYATIEIPQELLITEYNDPIHSIISSTFPDLSCHHNDPEYFQTRAILASTNETVQRVNDYMLTMIPGEQMEYLSSDSVDKSKTIESCHFRSLSTKFLNSLTTSGLPNHCLKLKIGTPIILLRNLDQTQGLCNGTRLIITKLAKHVIAADIISGTNIGDHFYIPRMSMSPSQSPWPFKLLRRQFPIMLSYAMTINKSQGQSLSSLKHHQMSQSIIH*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo