Report for Sequence Feature Glyma13g13830
Feature Type: gene_model
Chromosome: Gm13
Start: 17543870
stop: 17544898
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g13830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G05030 AT
Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr1:1438324-1441385 REVERSE LENGTH=524
SoyBase E_val: 1.00E-84 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0005351 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity
SoyBase N/A ISS
GO:0015144 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity
SoyBase N/A ISS
GO:0022857 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity
SoyBase N/A ISS
PTHR24063 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24063:SF84 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00083 PFAM
Sugar (and other) transporter
JGI ISS
UniRef100_B9SH59 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9SH59_RICCO
SoyBase E_val: 2.00E-87 ISS
UniRef100_I1LXX0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LXX0_SOYBN
SoyBase E_val: 5.00E-137 ISS
Expression Patterns of Glyma13g13830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma13g13830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g026900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g13830
Coding sequences of Glyma13g13830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g13830.1 sequence type=CDS gene model=Glyma13g13830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACATATTTCAGGTGGAGGACAATGCTGTATATTGCTAGCATCCCAGGTATTCTTGTTGCACTTGGTATGCAGTTTGCTGTTGATAGTCCGCGCTGGCTTTGCAAGGCTGGGAGAATAAATGATGCTAAAACAGTAGTACGTGAGCTTTGGGGAGCATCTGAAGTTGATAGTGCAATTGAGGAATTTCAGTCCGTCAGCAAGAATGATGGTAGTGATTTGGCCAGTAGATGGTCAGAGATCTTGGAGGAACCGCATTCTAGAGTTGCCTTTATTGGAGGTACTCTTTTTGTACTTCAGCAGTTTGCAGGCATAAATGGAGTTCTTTATTTTTCATCATTGACCTTTCAAAAAGTTGGAGTTGAAAGCAGTGCTTTAGCAAGCTTGTTTGTTGGGCTTACTAACTTTGCAGGTGCACTGTGTGCGTTATACTTAATTGATAGGGAAGGGAGACAAAAGCTTCTAATAGGAAGCTACTTAGGAATGGTGAGTGTGTACAAGATGTTCATAGTTTCGTGCTATATTGAGAAAGGAGAAATAGAGGCATTGGACAGAAACAGTGTCTCAATACACAACGGTTGA
Predicted protein sequences of Glyma13g13830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g13830.1 sequence type=predicted peptide gene model=Glyma13g13830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TYFRWRTMLYIASIPGILVALGMQFAVDSPRWLCKAGRINDAKTVVRELWGASEVDSAIEEFQSVSKNDGSDLASRWSEILEEPHSRVAFIGGTLFVLQQFAGINGVLYFSSLTFQKVGVESSALASLFVGLTNFAGALCALYLIDREGRQKLLIGSYLGMVSVYKMFIVSCYIEKGEIEALDRNSVSIHNG*