Report for Sequence Feature Glyma13g13300
Feature Type: gene_model
Chromosome: Gm13
Start: 17135746
stop: 17141029
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g13300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G04570 AT
Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:1594747-1596129 FORWARD LENGTH=350
SoyBase E_val: 2.00E-173 ISS
GO:0006629 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid metabolic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0016788 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds
SoyBase N/A ISS
PTHR22835 Panther
ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN
JGI ISS
PTHR22835:SF39 Panther
LATERAL SIGNALING TARGET PROTEIN 2
JGI ISS
PF00657 PFAM
GDSL-like Lipase/Acylhydrolase
JGI ISS
UniRef100_G7J8W2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7J8W2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LXW5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXW5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g13300
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma13g13300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g026300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g13300
Coding sequences of Glyma13g13300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g13300.1 sequence type=CDS gene model=Glyma13g13300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAATGCATAGTAGTATAATTTTTTGCATGTTCTTCCTTCCGTGGCTCTCCATGGTTGGTGCTAAGGTTCCGGCAATGATCGCGTTCGGGGACTCGTCGGTTGATGCTGGGAACAACAATTACATAGCAACGGTTGCTCGGAGCAATTTCCAGCCATATGGGCGTGACTTTGTGGGTGGGAAGCCAACTGGGAGATTCAGCAATGGCCGAATAGCAACAGATTTCTTATCCCAAGCCTTTGGAATCAAACCATACGTGCCCCCGTACTTGGATCCTAATCACAATATTTCACACTTCGCCACTGGGGTCTCCTTTGCTTCTGCTGCTACTGGCTATGACAATGCTACTTCAGATGTGCTTTCTGTGATACCATTATGGAAGCAGTTGGAGTACTATAAAGGGTACCAAAAGAAACTGAGTGTGTATCTTGGAGAAAGTAGGGCAAACGAGACCGTTGCCAAAGCATTGCACATAATAAGTTTGGGAACAAATGACTTCCTAGAGAATTATTTTGCAATCCCTGGCAGGGCATCTCAATATACACCAAGAGAGTATCAAAATTTTTTGGCTGGGATAGCTGAGAATTTCATCTACAAACTTTATGGTCTTGGTGCTAGGAAAATATCCTTAGGGGGTTTACCTCCCATGGGGTGCTTGCCACTGGAGAGAACCACAAATTTTGTTGGTGGTAATGAATGTGTGTCCAATTACAATAACATTGCATTGGAGTTCAATGATAATCTCAGTAAGTTGACAACCAAACTGAAGAAGGACCTTCCTGGGATCAGATTGGTATTTTCAAATCCGTATGATATTTTGTTGCAAATTATTAAAAGGCCCGCTCAGTATGGGTTTCAGGTTACCTCAATGGCATGTTGTGCTACTGGAATGTTTGAGATGGGATACGCATGCAGCAGGGCAAGTTCTTTCAGTTGCATAGATGCTTCCAGATATGTATTTTGGGACTCATTCCATCCAACGGAGAAAACTAATGGTATAATTGCAAAGTACCTGGTGAAGAACGCTTTAGCTCAATTTTTGCATTAA
Predicted protein sequences of Glyma13g13300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g13300.1 sequence type=predicted peptide gene model=Glyma13g13300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEMHSSIIFCMFFLPWLSMVGAKVPAMIAFGDSSVDAGNNNYIATVARSNFQPYGRDFVGGKPTGRFSNGRIATDFLSQAFGIKPYVPPYLDPNHNISHFATGVSFASAATGYDNATSDVLSVIPLWKQLEYYKGYQKKLSVYLGESRANETVAKALHIISLGTNDFLENYFAIPGRASQYTPREYQNFLAGIAENFIYKLYGLGARKISLGGLPPMGCLPLERTTNFVGGNECVSNYNNIALEFNDNLSKLTTKLKKDLPGIRLVFSNPYDILLQIIKRPAQYGFQVTSMACCATGMFEMGYACSRASSFSCIDASRYVFWDSFHPTEKTNGIIAKYLVKNALAQFLH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
