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Report for Sequence Feature Glyma13g13260

Feature Type:gene_model
Chromosome:Gm13
Start:16948361
stop:16951717
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g13260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12650AT Annotation by Michelle Graham. TAIR10: Endomembrane protein 70 protein family | chr4:7468207-7470165 REVERSE LENGTH=652 SoyBaseE_val: 0ISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
KOG1278 KOG Endosomal membrane proteins, EMP70 JGI ISS
PTHR10766Panther TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER JGI ISS
PTHR10766:SF1Panther gb def: hypothetical orf, yer113cp [saccharomyces cerevisiae] JGI ISS
PF02990PFAM Endomembrane protein 70 JGI ISS
UniRef100_G7J833UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane 9 superfamily protein member n=1 Tax=Medicago truncatula RepID=G7J833_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C471UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C471 related cluster n=1 Tax=unknown RepID=UPI000233C471 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g13260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g13260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g026100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g13260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g13260
>Glyma13g13260.1   sequence type=CDS   gene model=Glyma13g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTGCGAATACCCTTCATCTGCCGCTGTGTTTTCCTTTTTGTCGTCGTCTTTGCTCAAGTAGTCAATGCTTTTTATCTCCCCGGAAGCTATATGCACACTTACTCAAATAAAGATCTCATATATGCTAAAGTTAATTCGTTGACTTCGATTGAAACTGAGCTTCCCTACAACTACTACAGCCTCCCTTACTGCCAGCCGGATGGCGGCATAAAGAAAAGTGCTGAGAATCTTGGAGAACTTCTGATGGGAGATCAGATCGATAACTCACCGTACCGATTCCAGATGAATGTTAATGAGACGCTTTACCTCTGCACTACGCCCCTGTTGAATGAGCACGAGGTGAAGTTACTCAAACAAAGGGCACGGGATCTGTATCAAGTGAATATGATCCTTGACAACTTGCCTGTTATGAGGTTTACCAACCAAAATGGGGTTACAATCCAGTGGACAGGGTTCCCTGTTGGATACACTCCATCTGATGGCAGTGAAGATTACATCATTAACCACCTTAAGTTCACAGTCTTGGTTCATGAATATGAAGGAAGTGGGGTTGAAATTGTGGGGACTGGCGAGGAAGGTTTGGGTGTTATTTCAGAATCTGACAATAAAAAGGCATCAGGTTATGAAATAGTTGGTTTTCAGGTTGTACCTTGTAGTATTAAATATGATCTGGAAGTCATGACAAAGCACAAGAGGTATGATACTCTTTCTCCTATAAGTTGCCCGGCTGAGCTTGACGAGTATCAAGTGATAAGAGAGAAGGAAAGGATATCATTCACATATGAGGTTGAATTTGTGAAAAGTGATATAAGATGGCCATCACGTTGGGATGCTTATTTGAAGATGGAGGGTTCCCGAGTTCATTGGTTCTCAATCTTAAATTCACTTATGGTTATTTCTTTCCTGGCCGGTATTGTTTTTGTCATTTTCCTAAGAACTGTGAGAAGGGACTTAACGAGGTATGAGGAACTGGACAAAGAGACTCAAGCTCAGATGAACGAGGAGCTCTCTGGATGGAAACTTGTTGTGGGTGATGTGTTTAGGGAGCCTGATTGCTCGAAGCTTCTCTGCGTGATGGTTGGAGATGGGATTCAAATTCTTGGAATGGCTGGTGTTACTATTGTTTTTGCAGCACTTGGCTTCATGTCACCCGCGTCCCGAGGAATGCTACTAACAGGGATGATCGTCTTATATCTTATCCTGGGAATTGCTGCAGGCTATGTCAGCGTTCGTGTATGGAGGACCATTAAGGGAACAACAGAAGGGTGGAGATCAATTTCCTGGTTGGCTGCTTGTTTTTATCCTGGAATTGCTTTCATTATTCTTACAGTACTGAATTTTATTCTATGGAGCAGTAACAGTACTGGTGCCATACCGATTTCCTTGTATTTTGAGCTGTTCTTCCTCTGGTTCTGCATTTCTGTACCTCTTACCCTCATTGGAGGATTTATGGGGACAAAAGCTCAGCCAATTGAATATCCTGTACGCACTAACCAGATTCCAAGGGAAATTCCTGCACGTAAATACCCATCGTGGCTTCTTGTTCTTGGTGCTGGAACTCTTCCATTTGGAACCCTCTTCATTGAGCTTTTCTTCATCCTTTCCAGTATTTGGCTTGGGAGGTTCTATTATGTGTTTGGTTTCCTGTTGGTAGTTCTTCTATTGCTAATTGTTGTTTGTGCTGAAGTGTCTGTGGTCCTCACTTATATGCATCTCTGTGTGGAAGACTGGCGGTGGTGGTGGAAGGCATTCTTCGCATCAGGTTCTGTGGCTCTTTACGTCTTCTTATACTCCATTAACTACTTGGTGTTCGACCTGCGGAGTTTGAGTGGACCTGTCTCAGCTACCCTTTACCTTGGTTATTCACTACTCATGGCCATTGCAATCATGTTGTCTACCGGCACCATCGGCTTCCTTATGTCATTCTACTTTGTGCATTACTTGTTCTCATCAGTAAAGATAGATTGA
Predicted protein sequences of Glyma13g13260
>Glyma13g13260.1   sequence type=predicted peptide   gene model=Glyma13g13260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELRIPFICRCVFLFVVVFAQVVNAFYLPGSYMHTYSNKDLIYAKVNSLTSIETELPYNYYSLPYCQPDGGIKKSAENLGELLMGDQIDNSPYRFQMNVNETLYLCTTPLLNEHEVKLLKQRARDLYQVNMILDNLPVMRFTNQNGVTIQWTGFPVGYTPSDGSEDYIINHLKFTVLVHEYEGSGVEIVGTGEEGLGVISESDNKKASGYEIVGFQVVPCSIKYDLEVMTKHKRYDTLSPISCPAELDEYQVIREKERISFTYEVEFVKSDIRWPSRWDAYLKMEGSRVHWFSILNSLMVISFLAGIVFVIFLRTVRRDLTRYEELDKETQAQMNEELSGWKLVVGDVFREPDCSKLLCVMVGDGIQILGMAGVTIVFAALGFMSPASRGMLLTGMIVLYLILGIAAGYVSVRVWRTIKGTTEGWRSISWLAACFYPGIAFIILTVLNFILWSSNSTGAIPISLYFELFFLWFCISVPLTLIGGFMGTKAQPIEYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLVVLLLLIVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLRSLSGPVSATLYLGYSLLMAIAIMLSTGTIGFLMSFYFVHYLFSSVKID*






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