Glyma13g13155 - SoyBase

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Report for Sequence Feature Glyma13g13155

Feature Type:	gene_model
Chromosome:	Gm13
Start:	16860380
stop:	16864292
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g13155

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_D7TXU0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7TXU0_VITVI	SoyBase	E_val: 8.00E-83	ISS
UniRef100_I0YUU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA glycosylase n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0YUU2_9CHLO	SoyBase	E_val: 9.00E-66	ISS

Expression Patterns of Glyma13g13155

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g13155 not represented in the dataset	Glyma13g13155 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g13155 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g026000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g13155

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g13155

Limit To All Plant Sequences

>Glyma13g13155.2   sequence type=transcript   gene model=Glyma13g13155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAGCTTTTCAAAGTCCAAGTGCTTGTTATATTTGCCTTTGGGTAGCTGCAAGTCAAGCTTCAATTTGGAAAAAACAGTATGCAACCACGGCTTTTTTATGATGGCTCCAAACAAGTGGATTTCATCAACTAAATCTCTGCAACGCCCTCTAAGACTTGCGGACCAATGTTCTAGTGTTATTGTCACCATCTCCCATCTTCCTGAGAGTGCCAATATCCAAATTTATGTTCATGACATGGAAGGTGTCTCCTTAAAAAGTGAACAAGCAATATTGAAACAAGTTGCACGGATGCTAAGGATAAGTGACAAAGATGAAAAAGCAGTAAATGAGTTTCAAGGTCTTTATCCACAAGCAAAACAAGACGAGTTTGGTAGAATATTTCGCTCTCCCTCTCTTTTTGAGGATGTCGTCAAGTCTATACTCCTTTGCAAATGCACATGGGGCAAGACCCTGAACATGGTTAAATCTCTATGTGAGCTTCAATTACAACTTAGCAGTGGGCCTCGGTCAAACAGAAAAAAGCAATGTAAAACCAAAAGAAAACGAGGACAAAATAATGCAACTAGTAAAAAAAATCATGGAATAGGGAACTTTCCTAATTCAAAGGAACTTGTCAAATTCGGTGAAACTATTCTGCGAGAGCGCTGCAAAGTAGGATATAGAGCACAGTTCATAATCAAATTGGCTCAAAGTGTAGAGAAAGGGACCCTCGTACTAGAGAAACTTGAAATGGAATGCAATTTGTGGTCCTATAAAGTTGTGCATCGTAAATTGAGTGAGTTAAAAGGGTTTGGTCCATTTGTTGTTGCAACCATCCTAATGTGCATGGGGTGCTATGAGAAGGTTCCTGTAGATTCAGAAACAAAAAGACATCTAAATCAGGTTCCTGTAGATTCAGAAACAAAAAGACATCTAAATCAGGTTTGTTCCCTAGTCTTTGTGCGCCATTTAATTGCTAAAATGAAATTCATTTGAGATATTTAAGAGTAATTTTGTGAATATTTATATATTTTTTTATGAGTAATGTAATTCACATTATGAACGAAAGATGTTGCTGACGACTCCTATTCTGTTAGGCACATGGAATCTCAAGTTGCAATAGTCTAGATGTTGAAGAATTTTACAAGACATATGCACCATTCCAGTGTATCGCATTTTGGTTTGAGCTTCTACAAAGTTACGAAAAAGATCATGGGAAGTTAAGTGAGTTAGACGAATCTGACTATCCAAAGATCACAGGCAGTCAGTTCTTACAAAATGAAGAAAATGCGCCCAAATCATGATATCTTTCATACTTTTTTTGATAAGCATGATATCTTTCATACTTAATCGTGATTTTGTTTAAATTTAGGCTTGAAGTAGAACATTACAACAAATTTTGAAATTGTGGCCTGATTTCACTACAGGTGTGACTAGCTGCACCACCAGCAAGGGACTAAAAATTTTGTAATGGCCTAATTAATTGTGGCTCTAATTGTGTCTGGTGTCTCTTAGGTTTTCTGATGCAAATCATACAACCAAACCCTTAGTCTTATCTTTTTCTCCTTGTTTCTACATTTATATCTTTTAGACATGTCTACTTCTCACAAACTCAGACACATGCTTCTACTTAAAATGGAGGGACATTATATATATGTACGTCAACTATGGG

Coding sequences of Glyma13g13155

Limit To All Plant Sequences

>Glyma13g13155.1   sequence type=CDS   gene model=Glyma13g13155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAGCTTTTCAAAGTCCAAGTGCTTGTTATATTTGCCTTTGGGTAGCTGCAAGTCAAGCTTCAATTTGGAAAAAACAGTATGCAACCACGGCTTTTTTATGATGGCTCCAAACAAGTGGATTTCATCAACTAAATCTCTGCAACGCCCTCTAAGACTTGCGGACCAATGTTCTAGTGTTATTGTCACCATCTCCCATCTTCCTGAGAGTGCCAATATCCAAATTTATGTTCATGACATGGAAGGTGTCTCCTTAAAAAGTGAACAAGCAATATTGAAACAAGTTGCACGGATGCTAAGGATAAGTGACAAAGATGAAAAAGCAGTAAATGAGTTTCAAGGTCTTTATCCACAAGCAAAACAAGACGAGTTTGGTAGAATATTTCGCTCTCCCTCTCTTTTTGAGGATGTCGTCAAGTCTATACTCCTTTGCAAATGCACATGGGGCAAGACCCTGAACATGGTTAAATCTCTATGTGAGCTTCAATTACAACTTAGCAGTGGGCCTCGGTCAAACAGAAAAAAGCAATGTAAAACCAAAAGAAAACGAGGACAAAATAATGCAACTAGTAAAAAAAATCATGGAATAGGGAACTTTCCTAATTCAAAGGAACTTGTCAAATTCGGTGAAACTATTCTGCGAGAGCGCTGCAAAGTAGGATATAGAGCACAGTTCATAATCAAATTGGCTCAAAGTGTAGAGAAAGGGACCCTCGTACTAGAGAAACTTGAAATGGAATGCAATTTGTGGTCCTATAAAGTTGTGCATCGTAAATTGAGTGAGTTAAAAGGGTTTGGTCCATTTGTTGTTGCAACCATCCTAATGTGCATGGGGTGCTATGAGAAGGTTCCTGTAGATTCAGAAACAAAAAGACATCTAAATCAGGCACATGGAATCTCAAGTTGCAATAGTCTAGATGTTGAAGAATTTTACAAGACATATGCACCATTCCAGTGTATCGCATTTTGGTTTGAGCTTCTACAAAGTTACGAAAAAGATCATGGGAAGTTAAGTGAGTTAGACGAATCTGACTATCCAAAGATCACAGGCAGTCAGTTCTTACAAAATGAAGAAAATGCGCCCAAATCATGA

>Glyma13g13155.2   sequence type=CDS   gene model=Glyma13g13155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAGCTTTTCAAAGTCCAAGTGCTTGTTATATTTGCCTTTGGGTAGCTGCAAGTCAAGCTTCAATTTGGAAAAAACAGTATGCAACCACGGCTTTTTTATGATGGCTCCAAACAAGTGGATTTCATCAACTAAATCTCTGCAACGCCCTCTAAGACTTGCGGACCAATGTTCTAGTGTTATTGTCACCATCTCCCATCTTCCTGAGAGTGCCAATATCCAAATTTATGTTCATGACATGGAAGGTGTCTCCTTAAAAAGTGAACAAGCAATATTGAAACAAGTTGCACGGATGCTAAGGATAAGTGACAAAGATGAAAAAGCAGTAAATGAGTTTCAAGGTCTTTATCCACAAGCAAAACAAGACGAGTTTGGTAGAATATTTCGCTCTCCCTCTCTTTTTGAGGATGTCGTCAAGTCTATACTCCTTTGCAAATGCACATGGGGCAAGACCCTGAACATGGTTAAATCTCTATGTGAGCTTCAATTACAACTTAGCAGTGGGCCTCGGTCAAACAGAAAAAAGCAATGTAAAACCAAAAGAAAACGAGGACAAAATAATGCAACTAGTAAAAAAAATCATGGAATAGGGAACTTTCCTAATTCAAAGGAACTTGTCAAATTCGGTGAAACTATTCTGCGAGAGCGCTGCAAAGTAGGATATAGAGCACAGTTCATAATCAAATTGGCTCAAAGTGTAGAGAAAGGGACCCTCGTACTAGAGAAACTTGAAATGGAATGCAATTTGTGGTCCTATAAAGTTGTGCATCGTAAATTGAGTGAGTTAAAAGGGTTTGGTCCATTTGTTGTTGCAACCATCCTAATGTGCATGGGGTGCTATGAGAAGGTTCCTGTAGATTCAGAAACAAAAAGACATCTAAATCAGGTTCCTGTAGATTCAGAAACAAAAAGACATCTAAATCAGGTTTGTTCCCTAGTCTTTGTGCGCCATTTAATTGCTAAAATGAAATTCATTTGA

Predicted protein sequences of Glyma13g13155

Limit To All Plant Sequences

>Glyma13g13155.1   sequence type=predicted peptide   gene model=Glyma13g13155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESFSKSKCLLYLPLGSCKSSFNLEKTVCNHGFFMMAPNKWISSTKSLQRPLRLADQCSSVIVTISHLPESANIQIYVHDMEGVSLKSEQAILKQVARMLRISDKDEKAVNEFQGLYPQAKQDEFGRIFRSPSLFEDVVKSILLCKCTWGKTLNMVKSLCELQLQLSSGPRSNRKKQCKTKRKRGQNNATSKKNHGIGNFPNSKELVKFGETILRERCKVGYRAQFIIKLAQSVEKGTLVLEKLEMECNLWSYKVVHRKLSELKGFGPFVVATILMCMGCYEKVPVDSETKRHLNQAHGISSCNSLDVEEFYKTYAPFQCIAFWFELLQSYEKDHGKLSELDESDYPKITGSQFLQNEENAPKS*

>Glyma13g13155.2   sequence type=predicted peptide   gene model=Glyma13g13155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESFSKSKCLLYLPLGSCKSSFNLEKTVCNHGFFMMAPNKWISSTKSLQRPLRLADQCSSVIVTISHLPESANIQIYVHDMEGVSLKSEQAILKQVARMLRISDKDEKAVNEFQGLYPQAKQDEFGRIFRSPSLFEDVVKSILLCKCTWGKTLNMVKSLCELQLQLSSGPRSNRKKQCKTKRKRGQNNATSKKNHGIGNFPNSKELVKFGETILRERCKVGYRAQFIIKLAQSVEKGTLVLEKLEMECNLWSYKVVHRKLSELKGFGPFVVATILMCMGCYEKVPVDSETKRHLNQVPVDSETKRHLNQVCSLVFVRHLIAKMKFI*

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