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Report for Sequence Feature Glyma13g13050

Feature Type:gene_model
Chromosome:Gm13
Start:16796926
stop:16800452
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g13050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48160AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1423) | chr5:19528019-19529820 REVERSE LENGTH=574 SoyBaseE_val: 0ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010071GO-bp Annotation by Michelle Graham. GO Biological Process: root meristem specification SoyBaseN/AISS
GO:0010078GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of root meristem identity SoyBaseN/AISS
GO:0010468GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene expression SoyBaseN/AISS
GO:0010492GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of shoot apical meristem identity SoyBaseN/AISS
GO:0046740GO-bp Annotation by Michelle Graham. GO Biological Process: spread of virus in host, cell to cell SoyBaseN/AISS
GO:0080022GO-bp Annotation by Michelle Graham. GO Biological Process: primary root development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
GO:0046982GO-mf Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity SoyBaseN/AISS
PTHR21736Panther VERNALIZATION-INSENSITIVE PROTEIN 3 JGI ISS
PTHR21736:SF14Panther MLP3.23 PROTEIN JGI ISS
PF07227PFAM Protein of unknown function (DUF1423) JGI ISS
UniRef100_B0ZZ79UniRef Annotation by Michelle Graham. Most informative UniRef hit: Potyvirus VPg interacting protein n=1 Tax=Arachis hypogaea RepID=B0ZZ79_ARAHY SoyBaseE_val: 0ISS
UniRef100_I1LXW2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXW2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g13050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g13050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g025900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g13050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g13050
>Glyma13g13050.1   sequence type=CDS   gene model=Glyma13g13050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACCTCTGCGTCCACAATCACAGGTTGGAGCACCAAAAACATCGCTGTCTCTTGTTTCCTCAGACCCCCTCCTGTCTCCTGATGAACCTAGGTCAAACTCTGACAATCTCCGTGAATCTCCGGCTGAAAGTGCAAGTTCACAAGAAACTTGGCCTATAGCTGATGCTGCCGCAGCAAAGAAGATGGAGAATGGAAAAGCGGAGATTAATTGCCTTGAGCAGAAAGTGATTCATCGTGTTTCTAGTGCAGACAAAGTTACTCTTCAGGACGTTGCTAGAGAAAGTATCGCTACGATATGTGAAAAAATGCATCGTCTACCTGAGGAATATCTAGAAGAGTTGAAGAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGTTCGCAGCATAGAGAGGATTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTGACTGCCAAGACACTGGTCAGAACACATCGGGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATTAGTCTATCCCAGACTTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACACTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCGACATATTTGCATGGGCCCTTCTTCAAAGAGTGGAGCAGGACCGAGTGATATGTTTTTCAGGTGTCAAGCATGCAACAGGACTTCAGAATTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCACCGTCATGGGATGGAGAAGCCTTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGGAGTAAAGACCCCCGAGGAAGGAAGCTATTTTGGAAGTGTGATGATCTCAAGGAAAAATTTTTAAGTAAAAAAATGGATTCAAAAGCTGTTTGCCGGGCAATACTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTGCAAAATGCCTGGAAAATGGAGAAAGTGGAAGGTTGATTGCTCCACTGGACGCATGCAATAGAATTGCTGAAGTGGTGCATGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCTTATCTCTCGAAGCTTGTGATCGTGAACTAGCTGACAAGGCCAGGGAGGTGACAGAGCTCAAGATGGAGAGACAAAAAAAGAAGCTGCAGATAGAAGAGCTGGAGAAAATTGTGAGGCTGAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTGATGAGGCTAAACGAGAGGCCGAGAGGCTTCAAATGATTGCTCTTGCCAAGCAAGATAAATCAGAGGAAGAATTTACTAGCAACTACTTGAAACAACGATTAAACGAGGCTGAGGCCGAGAAGCAGTACCTTTATGAAAAGATCAAATTGCAGGAGAGTTCTCGCGCTTCGCAGGGCAGTAGTGGTGGTGACCCCTCTCAGATGCTGATGTATTCCAAAATTCACGATCTGCTTTACAGTGTTCCTTCCAAAGCAGACAGTCAGGGTAATGAGCGCCACCCTTTTCGGACAAATCCCTGA
Predicted protein sequences of Glyma13g13050
>Glyma13g13050.1   sequence type=predicted peptide   gene model=Glyma13g13050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLRPQSQVGAPKTSLSLVSSDPLLSPDEPRSNSDNLRESPAESASSQETWPIADAAAAKKMENGKAEINCLEQKVIHRVSSADKVTLQDVARESIATICEKMHRLPEEYLEELKNGLRVILEGGNGSQHREDFFILQKLVQSRTDLTAKTLVRTHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRERHICMGPSSKSGAGPSDMFFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKFLSKKMDSKAVCRAILMFFQELEVDSAKCLENGESGRLIAPLDACNRIAEVVHEAIRKMEMVADEKMRMFKKARLSLEACDRELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKADEAKREAERLQMIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQGSSGGDPSQMLMYSKIHDLLYSVPSKADSQGNERHPFRTNP*






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