Glyma13g13020 - SoyBase

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Report for Sequence Feature Glyma13g13020

Feature Type:	gene_model
Chromosome:	Gm13
Start:	16620670
stop:	16624260
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g13020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02970	AT	Annotation by Michelle Graham. TAIR10: WEE1 kinase homolog \| chr1:673408-676127 FORWARD LENGTH=500	SoyBase	E_val: 1.00E-163	ISS
GO:0000076	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication checkpoint	SoyBase	N/A	ISS
GO:0000087	GO-bp	Annotation by Michelle Graham. GO Biological Process: M phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000280	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear division	SoyBase	N/A	ISS
GO:0000724	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007050	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle arrest	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0016444	GO-bp	Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0051225	GO-bp	Annotation by Michelle Graham. GO Biological Process: spindle assembly	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0601	KOG	Cyclin-dependent kinase WEE1	JGI		ISS
PTHR11042	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE (EIF2-ALPHA KINASE)-RELATED	JGI		ISS
PTHR11042:SF23	Panther	INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED PROTEIN KINASE	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_I1LXV3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXV3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6T2Z4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Wee1 n=1 Tax=Glycine max RepID=Q6T2Z4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g13020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g13020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g025500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g13020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g13020

Limit To All Plant Sequences

>Glyma13g13020.1   sequence type=CDS   gene model=Glyma13g13020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGGAAAATGCAGAACGAGAAGCAGGACTTGGACTTGGTGATTTCTTCTTCTTCTCTGGACGACGATATCGACTTCATTCTCAGCCAGGACCTGTTTTGCACACCGGATTACCTGACCCCTGATAACAAGTTTCCTGTGAAAGGCTTCGATAGCAACAGTGTCGACTTGGAAGAGGAAGATGGCCCTTGCCCCAAGTCACCAGAGAAGAAGCCAAGTACTTCAAAAGGCAAGCGATGCCGAATGGATGATGCTATCTCAGGAGATACTCTCAGTTCTACCTCCTCTGGTGATAATCAGCCAATTGTGGAACTTGGAAATGACTTTGTTGGAGAGTATATTACTGATAAGCCAAAGGCTCGAAACTATGTGTCTCGTTCTGCAGTTGCATTGCGTTGCAGGGTTATGCCTCCTCCTTGTATTAGAAACCCCTTTTTGAAATGCCTTTCAGAAAAGGAAATCGACCCTTTTGAAAGTCAAAGATCAAAATTTGCAGGCCTCTTCCCTGCACTTGTTGGTGGTGGTGGTGGTGGTGATTGTCTTTCACGCTACCGCAATGACTTTCATGAGATTGAGCAAATTGGTATAGGTCACTTCAGCAATGTTTTCAAAGTAATAAAGCGAATAGATGGTTGCTTGTATGCTGTGAAACACAGCACCAGGAAGTTGTGCAAGGAAACAGAAAGGGAAAAAGCCTTGATGGAAGTTCAAGCTTTGGCTGCCATAGGTTCCCATGAGAACATTGTGGGGTACTATTCTTCATGGTTTGAAAATGAACAACTGTATATTCAGATGGAGCTATGTGATCACAGCTTATCCATAAAAAATTGTCCATCATTAGTCACTGCAGGACATGAAATAGAAGCTTTGTATCAGGTTGCCAGTGCATTGCAATTTATCCATAAGAAGGGAATAGCTCATCTTGATGTTAAGCCTGAAAATATTTATGTGAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTACTTGATAATAGCCTTCCAATTGAGGAGGGTGATGCACATTATATGCCTCAGGAAATCCTTAATGAGAATTATGATCACCTTGACAAGGTTGATATCTTCTCCCTGGGAGCTTCTATGTTTGAGCTAATTAGCAGCTCGTGTTTGCCAGAACCAGAATCAGGAATTCAGTTCTTTAATCCTAAAGAGGGAAAGGTGCCATTCTTGCCAGGAGTTTCAGTGCAATTTCAAAACTTACTCACGGTCATGATGGACCCCGATCCGGTTAAGCGGCCTTCGGCTACAAAGTTGCTGAAGAGGGTCCTTGAAATGGCAAGAAATTGA

Predicted protein sequences of Glyma13g13020

Limit To All Plant Sequences

>Glyma13g13020.1   sequence type=predicted peptide   gene model=Glyma13g13020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRKMQNEKQDLDLVISSSSLDDDIDFILSQDLFCTPDYLTPDNKFPVKGFDSNSVDLEEEDGPCPKSPEKKPSTSKGKRCRMDDAISGDTLSSTSSGDNQPIVELGNDFVGEYITDKPKARNYVSRSAVALRCRVMPPPCIRNPFLKCLSEKEIDPFESQRSKFAGLFPALVGGGGGGDCLSRYRNDFHEIEQIGIGHFSNVFKVIKRIDGCLYAVKHSTRKLCKETEREKALMEVQALAAIGSHENIVGYYSSWFENEQLYIQMELCDHSLSIKNCPSLVTAGHEIEALYQVASALQFIHKKGIAHLDVKPENIYVKNGVYKLGDFGCATLLDNSLPIEEGDAHYMPQEILNENYDHLDKVDIFSLGASMFELISSSCLPEPESGIQFFNPKEGKVPFLPGVSVQFQNLLTVMMDPDPVKRPSATKLLKRVLEMARN*

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