SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74040 | AT | Annotation by Michelle Graham. TAIR10: 2-isopropylmalate synthase 1 | chr1:27842258-27845566 FORWARD LENGTH=631 | SoyBase | E_val: 5.00E-69 | ISS |
| GO:0009098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leucine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003852 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2-isopropylmalate synthase activity | SoyBase | N/A | ISS |
| GO:0046912 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | SoyBase | N/A | ISS |
| PTHR10277 | Panther | ISOPROPYLMALATE SYNTHASE RELATED | JGI | ISS | |
| PTHR10277:SF9 | Panther | 2-ISOPROPYLMALATE SYNTHASE-RELATED | JGI | ISS | |
| PF08502 | PFAM | LeuA allosteric (dimerisation) domain | JGI | ISS | |
| UniRef100_Q39891 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Probable 2-isopropylmalate synthase n=1 Tax=Glycine max RepID=LEU1_SOYBN | SoyBase | E_val: 2.00E-132 | ISS |
| UniRef100_Q39891 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable 2-isopropylmalate synthase n=1 Tax=Glycine max RepID=LEU1_SOYBN | SoyBase | E_val: 2.00E-132 | ISS |
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Glyma13g12498 not represented in the dataset |
Glyma13g12498 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g024900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g12498.1 sequence type=CDS gene model=Glyma13g12498 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAACAAAATCTTCGTTGGAATCCATATTGGTTCTGGTTAGGATTAACATTAGAAGTGGTCTTTTTTGGATTATGGGTGCAAAAGATAGAAGAGAGGAAAGTTACGTAGTAAAAATCACAATATTTGGAAGCCAAGCTTTGAGAAAGAGACTTGAAGAGCTTGGTTATGATCTTAAGGAAGATGAAGTTGATAGTGTGTTTTGGCAATTCAAAGCAATGGCTGAGAAAAAAAAGGTTGTAACTGATGTTGACCTCAAAGCATTAGTATCATATAAAGCTTTTCATGCAGAATCTATCTGGAAGCTTGGTGATTTACAAGTGACTTGTGGAACTATTGGTCTTTCTACAGCAACAGTAAAACTTGTTAATATTGATGGTAGCACACATGTTGCTTGTTCTATTGGTATAGGAGCAGTGGATTCAACTTACAAGGCCATTAATCTCATTGTGAAGGAACCTACAAAACTTTTGGATTACTCATTGAATTCAGTTACAGAAGGCATTGGTGTAAATGTCACAGCACGTGTTGTAATTTGTAGGGAGAACAATCATACATCTACTTATGCTTTCACTGAAGATGCTAATTATCCAACATTTAGTGGGATTGCAGCAGAAATGGATGTTGTTGTTTCCACTGTTAAGGCTTATCTGGTTGCACTAAACAAGTTGTTACGATGGAAGGAATCATTTAGATGTGCTTAA
>Glyma13g12498.1 sequence type=predicted peptide gene model=Glyma13g12498 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTKSSLESILVLVRINIRSGLFWIMGAKDRREESYVVKITIFGSQALRKRLEELGYDLKEDEVDSVFWQFKAMAEKKKVVTDVDLKALVSYKAFHAESIWKLGDLQVTCGTIGLSTATVKLVNIDGSTHVACSIGIGAVDSTYKAINLIVKEPTKLLDYSLNSVTEGIGVNVTARVVICRENNHTSTYAFTEDANYPTFSGIAAEMDVVVSTVKAYLVALNKLLRWKESFRCA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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