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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma13g12181

Feature Type:gene_model
Chromosome:Gm13
Start:15665149
stop:15665603
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g12181
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
UniRef100_G7K0D8UniRef Annotation by Michelle Graham. Most informative UniRef hit: RRNA intron-encoded homing endonuclease n=1 Tax=Medicago truncatula RepID=G7K0D8_MEDTR SoyBaseE_val: 4.00E-13ISS
UniRef100_UPI000233B937UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B937 related cluster n=1 Tax=unknown RepID=UPI000233B937 SoyBaseE_val: 2.00E-33ISS

Expression Patterns of Glyma13g12181
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g12181 not represented in the dataset
Glyma13g12181 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g12181 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma13g12181
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g12181
>Glyma13g12181.1   sequence type=CDS   gene model=Glyma13g12181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACATCGTTTCCCCAACGCAAACATACCAATCACGTGCGAGCCGGTCAGTTCTGGACCCATCGACGACCCTTTGCGTGCACGCACGCTCCCAACGAGACCTCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAAAGCCCACCATGA
Predicted protein sequences of Glyma13g12181
>Glyma13g12181.1   sequence type=predicted peptide   gene model=Glyma13g12181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHACLGVTHRFPNANIPITCEPVSSGPIDDPLRARTLPTRPQVRRGYPLSLSISISGGKETNKDSLSNGERTGKSPP*






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