Glyma13g11740 - SoyBase

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Report for Sequence Feature Glyma13g11740

Feature Type:	gene_model
Chromosome:	Gm13
Start:	14549799
stop:	14556094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g11740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07670	AT	Annotation by Michelle Graham. TAIR10: Rubisco methyltransferase family protein \| chr3:2451651-2454617 FORWARD LENGTH=504	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0030785	GO-mf	Annotation by Michelle Graham. GO Molecular Function: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	SoyBase	N/A	ISS
KOG1337	KOG	N-methyltransferase	JGI		ISS
PTHR13271	Panther	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	JGI		ISS
PF00856	PFAM	SET domain	JGI		ISS
PF09273	PFAM	Rubisco LSMT substrate-binding	JGI		ISS
UniRef100_G7J8U8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SET domain-containing protein n=2 Tax=Medicago truncatula RepID=G7J8U8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00018C67C3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C67C3 related cluster n=1 Tax=unknown RepID=UPI00018C67C3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g11740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g11740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g010500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g11740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g11740

Limit To All Plant Sequences

>Glyma13g11740.1   sequence type=CDS   gene model=Glyma13g11740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGGCCATGGCTGAGGCTTCAAGAATCACGTTACACTCCACTCTCCTCCCTTTTTTTACCCCCAAAACCCACGTTGGTCACCGCCACTTAAGCCTCTCGTCATCACGCAAGCACCAAGTCCAGTGCTCGGTGTCTGCAGGCGCGGCGGCTCAGACGAACCCAGTGGCTTGGGGCTGCGAGATTGACTCGCTGGAGAACTCTTCGGCTCTGCAGAGATGGCTGTCGGAGTCGGGGCTTCCGCCGCAGAAGATGGGAATAGAGAGAGTGGAGGTGGGAGAGAGAGGGCTGGTTGCTTTGAAGAACATTAGGAAAGGGGAGAAACTACTCTTTGTGCCTCCCTCACTTGTCATTACTCCAGATTCTGAGTGGAGCTGCCCCGAAGCTGGTGAAGTATTGAAAAGGAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCAAGATGGAGCAATTATATATCAGCCTTACCTCGTCAACCTTACTCACTTCTTTACTGGACGCAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAAATTAGGGAGAGAGCGATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGATGAGGTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGTATTCTTTTCTCCCGCTTGGTTCGGTTACCCTCAATGGGTGGAAATGTTGCCTTGGTTCCTTGGGCTGATATGCTGAATCATAGTTGTGATGTGGAGACATTTTTGGATTATGATAAGACATCAAAGGGAATTGTCTTCACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTATTTATTTCATATGGAAAAAAATCAAATGGGGAGCTTTTGTTATCTTATGGATTTGTTCCAAAGGAAGGCGCTAATCCTAGTGATTCAGTTGAGTTGTCACTGTCACTGAAGAAATCTGATGCGTCCTATAAGGAGAAGTTAGAGCTGTTGAAGAATTATGGATTATCAGCATCTCAGTGTTTTCCTATACAGATTACTGGTTGGCCTTTGGAATTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAGATTTTGAAGAGATGGCTGCTGCAGCATCAAATAATACCACCTCCAAGAAGGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGTTGTGAATCCAGCATATCAAAATACAACAAGTTCTTACAGGCAAGTGGATCACTGGATCTGGATGTGACTTCTCCTAAACAACTCAACCGAAGGCTCTTTCTGAAACAGCTAGCTGTGGACTTGTGTACTAGTGAGCGAAGGATATTATTTCGTGCTCAATACATACTGCGAAGAAAACTGAGGGACATGAGGGCTGGTGAATTAAGGGCCCTAAAAATATTCAACGGTTTCCGGAATCTTTTCCAATGA

Predicted protein sequences of Glyma13g11740

Limit To All Plant Sequences

>Glyma13g11740.1   sequence type=predicted peptide   gene model=Glyma13g11740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMAMAEASRITLHSTLLPFFTPKTHVGHRHLSLSSSRKHQVQCSVSAGAAAQTNPVAWGCEIDSLENSSALQRWLSESGLPPQKMGIERVEVGERGLVALKNIRKGEKLLFVPPSLVITPDSEWSCPEAGEVLKRNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWTQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPDEVFNIESFKWSFGILFSRLVRLPSMGGNVALVPWADMLNHSCDVETFLDYDKTSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGANPSDSVELSLSLKKSDASYKEKLELLKNYGLSASQCFPIQITGWPLELMAYAYLAVSPSSMRGDFEEMAAAASNNTTSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRKLRDMRAGELRALKIFNGFRNLFQ*

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