Report for Sequence Feature Glyma13g11710
Feature Type: gene_model
Chromosome: Gm13
Start: 14486884
stop: 14493412
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g11710
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G04360 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:1519645-1521030 REVERSE LENGTH=320
SoyBase E_val: 8.00E-119 ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1LXQ2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXQ2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_UPI0001C3901D UniRef
Annotation by Michelle Graham. Most informative UniRef hit: hypothetical protein AplaP_07147 n=1 Tax=Arthrospira platensis str. Paraca RepID=UPI0001C3901D
SoyBase E_val: 1.00E-26 ISS
Expression Patterns of Glyma13g11710
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma13g11710 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g010200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g11710
Coding sequences of Glyma13g11710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g11710.1 sequence type=CDS gene model=Glyma13g11710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTATATGTTGTTGAGGTTTATCCAAAACAAAAGTAGATGTGGAAATTGGAATAGCCAAAGCCATAGCCATACGGCAGTACCCACCCTTGCAGTGTTGACTATGCTGCTAGCTCAACCCATTTTCCTCTCTCGCAACTTTCCCACTCTCAACAACCGAAACTCGAGAACTTCTCTTCAACTTCACAACCCTCCTGCACTCATAAGAGTTTCACCGCAAAGAACGCCAATAATAGCCTCTTCTGGTTGTTTTGGTTGCTTCGTAAAACCGCTTGATGTCAGAACCAAAACCTCGCTGGGTGCGTTTTTTAAGAAAAGAAAGGGTTGTGCACATATTTGCCATAGTTTGAAGGAAGAGAGCGAGGTTGGTGGGAATGGCAATAATGGAAGAGACTGGACGACCTCCATTTTGCTCTTTCTACTGTGGGCTGCGCTAATGTACTATGTTTTCTTTCTCACCCCAAACCAGACCCCGTCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGATGGTTTCAGAATGAATGAAGTGCTAGTATCATTGTGGTATTTAATGGGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAGCTCAAAAAACAATATTCCTGTATGGCCATTCCTGATACTTTCATGTTTTGGTGGTGCATATGTTCTTCTTCCATATTTCGTACTTTGGAAACCGCCAGCTCCTCCTGTCGAAGAAACTCAGCTTAAAACATGGCCTTTGAATTTCCTGGAATCAAAAGTAACTGCAATGATATCACTTGCGGCAGGGGTAGCCATCATAACTTATGCTGGTCTAGCTGGACAAGATGTGTGGAAAGAATTTTACCAGTACTTCAGGGAAAGCAAATTTATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACGGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGGGCCTGGTTTATACCTTCTCCTGCGGCCATCATTATCAACAGTGGCCATTTCACAGACTCCTGTTGAGCCAGAGTAA
Predicted protein sequences of Glyma13g11710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g11710.1 sequence type=predicted peptide gene model=Glyma13g11710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYMLLRFIQNKSRCGNWNSQSHSHTAVPTLAVLTMLLAQPIFLSRNFPTLNNRNSRTSLQLHNPPALIRVSPQRTPIIASSGCFGCFVKPLDVRTKTSLGAFFKKRKGCAHICHSLKEESEVGGNGNNGRDWTTSILLFLLWAALMYYVFFLTPNQTPSRDTYFLKKLLNLKGDDGFRMNEVLVSLWYLMGLWPLVYSMLLLPTGRSSKNNIPVWPFLILSCFGGAYVLLPYFVLWKPPAPPVEETQLKTWPLNFLESKVTAMISLAAGVAIITYAGLAGQDVWKEFYQYFRESKFIHITSIDFIILSTFAPFWVYNDMTARKRFDKGSWLLPISLIPFLGPGLYLLLRPSLSTVAISQTPVEPE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
