Report for Sequence Feature Glyma13g11700
Feature Type: gene_model
Chromosome: Gm13
Start: 14444393
stop: 14454973
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g11700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G04350 AT
Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr2:1516086-1519178 FORWARD LENGTH=720
SoyBase E_val: 0 ISS
GO:0001676 GO-bp
Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process
SoyBase N/A ISS
GO:0006631 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process
SoyBase N/A ISS
GO:0006633 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004467 GO-mf
Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity
SoyBase N/A ISS
KOG1180
KOG
Acyl-CoA synthetase
JGI ISS
PTHR24096 Panther
FAMILY NOT NAMED
JGI ISS
PF00501 PFAM
AMP-binding enzyme
JGI ISS
UniRef100_G7JI82 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Annotation was added to scaffolds in November 2011 Long-chain-fatty-acid-CoA ligase n=1 Tax=Medicago truncatula RepID=G7JI82_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233B7D8 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B7D8 related cluster n=1 Tax=unknown RepID=UPI000233B7D8
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g11700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma13g11700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g010100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g11700
Coding sequences of Glyma13g11700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g11700.2 sequence type=CDS gene model=Glyma13g11700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGATCCAAAGGGTAGTTCCTCGTGGTTAAAAAGTCTAAATATAAGTGACATATTTGGCTGGAAAGGTCATGGAGAATATGGAGCTCTGGCAGCTATAGTCATAAGCATTCTTGTTCCTGTCTTGTTTTCAGCTTTGTTCTTTGGAAAGAAAAAAGGAAAAATAAGAGGTGTGCCGGTAGAAGTTGGTGGTGAGGAATGCTTTGCAGTACGTAATGCTAGAAAAACTGAGTTGGTTGAGGTTCCTTGGAAAGGAGCCCCAACCATGGCTCATCTATTTGAGCAATCCTGTAATAAATATACCCGCAATCAATTTCTTGGAACTAGAAAAATAATACAAAAGGAGTTTGTTACATCTAGTGATGGCAGGAAGTTTGAGAAACTTCATTTAGGAGACTACGAATGGGAAACCTATGGAGAGGTATTTGCTCGTGTGTCCAATTTTGCATCTGGTCTTCTTAAATTGGGCCATAATGGAGATAGCCGTGTTGCCATTTTCTCTGATACCAGGGCTGAGTGGCTCATTGCCCTTCAGGGTTGCTTCAGGCAGAATGTAACAGTTGTTACTATTTATGCTTCTCTAGGTGAGGATGCCCTGATCCACTCACTAAATGAGACTGAAGTATCTACTCTGATCTGTGACTCCAAGCAGTCAAAGAAGTTGGATGCAATAAGATCAAGACTAACATCTTTACAAAATGTTATTTACTTTGAAGATGATAACGAAGAAGATGCTTTCTCTGGAAGTTCAAGCGGCTGGACAATTGCATCTTTTAGTGAAGTTGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTTCCAAAGGGTGTCATGATTACTCACGGGAACATTGTAGCGACTACAGCAGCTGTTATGACAGTGATTCCAAATCTGGGTAGCAAGGATGTGTACCTGGCATACTTGCCCCTTGCTCATGTTTTTGAAATGGCAGCAGAGTCTGTTATGCTGGCTGCAGGTTGTGCAATTGGTTACGGCTCTCCTCTGACTTTGACTGACACGTCTAATAAAGTCAAGAAAGGAACCAAGGGAGATGCTACTGTGTTAAAGCCCACACTTTTGACAGCAGTACCAGCTATTCTTGATCGGATTCGAGATGGAGTTGTAAAAAAGGTTGAGCAAAAAGGGGGCCTTGTGAAGAATCTTTTCCATTTTGCATACAAGCGCCGACTGGGTGCTGTAAAAGGAAGCTGGCTAGGAGCTTGGGGATTGGAAAAGTTGATGTGGGATACCATTGTCTTTAAACAAATTCGTACTGCACTTGGAGGCCAGCTCCGGTTTATGCTTTGTGGGGGAGCTCCTTTATCTGGAGATTCACAACACTTCATCAATATCTGCATGGGGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCGGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCAAGGGGAGAGATTGTAGTTGGAGGATTTAGTGTGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAAAGAAGTGTTCAAGGTTGATGAGAAGGGAATGCGCTGGTTTTATACTGGCGATATTGGGCAATTCCATCCTGATGGATGTCTTGAAATCATAGATAGGAAGAAAGATATTGTCAAACTTCAACATGGAGAATATATATCTCTTGGAAAGATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTATGCAGACCCCTTTCACAATTACTGTGTGGCTCTAGTTGTTGCTTCGCATCAGTCCCTGGAGAAGTGGGCCCAACAAGCTGGTATAGATTACCAAGATTTTCCTGATCTGTGTAACAAACCTGAAACTGTCACTGAGGTTCTTCAGTCTATTTCCAAGGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATCCCTGCAAAGATTAAGTTGCTGCCGGATCCATGGACTCCTGAATCTGGATTGGTCACTGCAGCTCTCAAGATAAAGAGAGAGCAGCTGAAAGCCAAATTCAAAGATGAGCTTCAGAAGTTGTATGCATGA
Predicted protein sequences of Glyma13g11700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g11700.2 sequence type=predicted peptide gene model=Glyma13g11700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDPKGSSSWLKSLNISDIFGWKGHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARKTELVEVPWKGAPTMAHLFEQSCNKYTRNQFLGTRKIIQKEFVTSSDGRKFEKLHLGDYEWETYGEVFARVSNFASGLLKLGHNGDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLGEDALIHSLNETEVSTLICDSKQSKKLDAIRSRLTSLQNVIYFEDDNEEDAFSGSSSGWTIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTVIPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATVLKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLGAVKGSWLGAWGLEKLMWDTIVFKQIRTALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSEWDDYSVGRVGPPLPCCHIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTKEVFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKIEAALSSCDHVDNIMVYADPFHNYCVALVVASHQSLEKWAQQAGIDYQDFPDLCNKPETVTEVLQSISKVAKSAKLEKTEIPAKIKLLPDPWTPESGLVTAALKIKREQLKAKFKDELQKLYA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
