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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma13g11700

Feature Type:gene_model
Chromosome:Gm13
Start:14444393
stop:14454973
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g11700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G04350AT Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr2:1516086-1519178 FORWARD LENGTH=720 SoyBaseE_val: 0ISS
GO:0001676GO-bp Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process SoyBaseN/AISS
GO:0006631GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004467GO-mf Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity SoyBaseN/AISS
KOG1180 KOG Acyl-CoA synthetase JGI ISS
PTHR24096Panther FAMILY NOT NAMED JGI ISS
PF00501PFAM AMP-binding enzyme JGI ISS
UniRef100_G7JI82UniRef Annotation by Michelle Graham. Most informative UniRef hit: Annotation was added to scaffolds in November 2011 Long-chain-fatty-acid-CoA ligase n=1 Tax=Medicago truncatula RepID=G7JI82_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233B7D8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B7D8 related cluster n=1 Tax=unknown RepID=UPI000233B7D8 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g11700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g11700 not represented in the dataset
Glyma13g11700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g11700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g010100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g11700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g11700
>Glyma13g11700.2   sequence type=CDS   gene model=Glyma13g11700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATCCAAAGGGTAGTTCCTCGTGGTTAAAAAGTCTAAATATAAGTGACATATTTGGCTGGAAAGGTCATGGAGAATATGGAGCTCTGGCAGCTATAGTCATAAGCATTCTTGTTCCTGTCTTGTTTTCAGCTTTGTTCTTTGGAAAGAAAAAAGGAAAAATAAGAGGTGTGCCGGTAGAAGTTGGTGGTGAGGAATGCTTTGCAGTACGTAATGCTAGAAAAACTGAGTTGGTTGAGGTTCCTTGGAAAGGAGCCCCAACCATGGCTCATCTATTTGAGCAATCCTGTAATAAATATACCCGCAATCAATTTCTTGGAACTAGAAAAATAATACAAAAGGAGTTTGTTACATCTAGTGATGGCAGGAAGTTTGAGAAACTTCATTTAGGAGACTACGAATGGGAAACCTATGGAGAGGTATTTGCTCGTGTGTCCAATTTTGCATCTGGTCTTCTTAAATTGGGCCATAATGGAGATAGCCGTGTTGCCATTTTCTCTGATACCAGGGCTGAGTGGCTCATTGCCCTTCAGGGTTGCTTCAGGCAGAATGTAACAGTTGTTACTATTTATGCTTCTCTAGGTGAGGATGCCCTGATCCACTCACTAAATGAGACTGAAGTATCTACTCTGATCTGTGACTCCAAGCAGTCAAAGAAGTTGGATGCAATAAGATCAAGACTAACATCTTTACAAAATGTTATTTACTTTGAAGATGATAACGAAGAAGATGCTTTCTCTGGAAGTTCAAGCGGCTGGACAATTGCATCTTTTAGTGAAGTTGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTTCCAAAGGGTGTCATGATTACTCACGGGAACATTGTAGCGACTACAGCAGCTGTTATGACAGTGATTCCAAATCTGGGTAGCAAGGATGTGTACCTGGCATACTTGCCCCTTGCTCATGTTTTTGAAATGGCAGCAGAGTCTGTTATGCTGGCTGCAGGTTGTGCAATTGGTTACGGCTCTCCTCTGACTTTGACTGACACGTCTAATAAAGTCAAGAAAGGAACCAAGGGAGATGCTACTGTGTTAAAGCCCACACTTTTGACAGCAGTACCAGCTATTCTTGATCGGATTCGAGATGGAGTTGTAAAAAAGGTTGAGCAAAAAGGGGGCCTTGTGAAGAATCTTTTCCATTTTGCATACAAGCGCCGACTGGGTGCTGTAAAAGGAAGCTGGCTAGGAGCTTGGGGATTGGAAAAGTTGATGTGGGATACCATTGTCTTTAAACAAATTCGTACTGCACTTGGAGGCCAGCTCCGGTTTATGCTTTGTGGGGGAGCTCCTTTATCTGGAGATTCACAACACTTCATCAATATCTGCATGGGGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCGGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCCACATTAAGCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCAAGGGGAGAGATTGTAGTTGGAGGATTTAGTGTGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAAAGAAGTGTTCAAGGTTGATGAGAAGGGAATGCGCTGGTTTTATACTGGCGATATTGGGCAATTCCATCCTGATGGATGTCTTGAAATCATAGATAGGAAGAAAGATATTGTCAAACTTCAACATGGAGAATATATATCTCTTGGAAAGATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTATGCAGACCCCTTTCACAATTACTGTGTGGCTCTAGTTGTTGCTTCGCATCAGTCCCTGGAGAAGTGGGCCCAACAAGCTGGTATAGATTACCAAGATTTTCCTGATCTGTGTAACAAACCTGAAACTGTCACTGAGGTTCTTCAGTCTATTTCCAAGGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATCCCTGCAAAGATTAAGTTGCTGCCGGATCCATGGACTCCTGAATCTGGATTGGTCACTGCAGCTCTCAAGATAAAGAGAGAGCAGCTGAAAGCCAAATTCAAAGATGAGCTTCAGAAGTTGTATGCATGA
Predicted protein sequences of Glyma13g11700
>Glyma13g11700.2   sequence type=predicted peptide   gene model=Glyma13g11700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDPKGSSSWLKSLNISDIFGWKGHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARKTELVEVPWKGAPTMAHLFEQSCNKYTRNQFLGTRKIIQKEFVTSSDGRKFEKLHLGDYEWETYGEVFARVSNFASGLLKLGHNGDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLGEDALIHSLNETEVSTLICDSKQSKKLDAIRSRLTSLQNVIYFEDDNEEDAFSGSSSGWTIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTVIPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATVLKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLGAVKGSWLGAWGLEKLMWDTIVFKQIRTALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSEWDDYSVGRVGPPLPCCHIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTKEVFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKIEAALSSCDHVDNIMVYADPFHNYCVALVVASHQSLEKWAQQAGIDYQDFPDLCNKPETVTEVLQSISKVAKSAKLEKTEIPAKIKLLPDPWTPESGLVTAALKIKREQLKAKFKDELQKLYA*






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