SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07930 | AT | Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein | chr3:2526720-2528416 FORWARD LENGTH=445 | SoyBase | E_val: 3.00E-73 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| PTHR15074 | Panther | 5-METHYLCYTOSINE G/T MISMATCH-SPECIFIC DNA GLYCOSYLASE | JGI | ISS | |
| PF00730 | PFAM | HhH-GPD superfamily base excision DNA repair protein | JGI | ISS | |
| UniRef100_I1LXP7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LXP7_SOYBN | SoyBase | E_val: 3.00E-172 | ISS |
| UniRef100_Q28HB5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Methyl-CpG binding domain protein 4 n=1 Tax=Xenopus (Silurana) tropicalis RepID=Q28HB5_XENTR | SoyBase | E_val: 2.00E-25 | ISS |
|
Glyma13g11614 not represented in the dataset |
Glyma13g11614 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g009500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g11614.1 sequence type=CDS gene model=Glyma13g11614 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTACATTTTAGCGTTGCCTGCGCAGAAAGAAGGAAGTTTGGTTGATGTAAAGAAGCCAAAGATGAAGAATGAAGAAGCTTCCAACAACAAAAAGAGGTTGATGGAACATGATTTGCCAAAGAGTGGCAATGAAATGGGAGCTGCAAACACCAAAACCAATAACGGGAAGAGAACGTCTAAAAAGCATGAGAAAGAGAAAGTTCCAAAGATTTATCCGTACTTTCGGCACAACTATGAGAAGAAGGGAGACAATTGGGAAGAAAATAAAGATGAAATTGCAACTGAAAAGATCAAATCCAAAAGGAAGAGAAGGCCCAAGAAGCATGAGCCTGAAGGTGACTGTGAGGAGAAAATTGATCCCGAATCATGTTGTTATGGCTCTGACATTGGACTTGTTGAAGATATGCTGCTCGCAGATGGAAAGATTAAATCCAAGGAAAGGAGGAAGAAGAAGAAGAAGAAGAAAGCAGTTCAGGATAAGCTGTGGGAGAATGGTGATGATGCTGAAACCAAAAAATTCAAACTCAAGAAGCGTGAACCTCAAGGTGACAACAGAGAGAAGGCTGATCCTGAGTTGTGTTGTTATGGCTCTAACATTGGATTTGTTGAAGATATGCTGCTGGCAGATGGAAAGATTAAATCTAAGCAAAAGAAGAAGAAAAAAGCAGTTCAAGATAAGCTGTGGGAGAATGGTGATGATACTGAAACCAGTAAATTCATACTCAAGAAGCGTGAGTCTCAAGGTGACAACAGGGAGAAGATCGATCCTGAGTCATGTTGTTATGACTGTGACATTGAATTTGTTGAAGATAAGCTGCCGGCGGATGGAAAGATTAAATCTAAGGAAAAGAAGAATAAGAAAGTGGTTGAGGATAACCTGTGGGAGAATGGTGATGACACTGAAATCGATAAATTCATACTCACGAAGTGTGAGCCTCAAGGTGGCAACGAGGAGAAGATTCATCCTGAATCCTGTTGTGGCTGTGACATTGGATTTGCCGAAGATAAACTGCTGGCAGATGGAAAGATTAAACCCAAGGAAAAGAAGAAGAAAAAGAAGAAAGTTCAGAATAAGCTGTGGGAGAATGGTGATGACACTGAAATCAGTAAATTCATACTCAAGAAGCGTGAGTCTCAAGGTGACAACGTGGAGAAGATTGATCCTGAGTCATGTTGTTATGGCTGTCACATTGAATTTGTTGAAGATAAGCTGCCGGCGGATGGAAAGATTAAATCCAAGGAAAAGAAGAAGAAGAAAGCGGTTGAGGACGAGCTTTGGGAAAATGGTGATGATGCTGAACCCAGTCAATTAAAACTCAAGAAAACGGGACCTGAAGTTCATAAACATAAAGTTCAGGTTGGTGTTAGATATGTTTCACCTTATTTTCATAATGATAATGCAAAGAAGATAAATTTTGAATCATTTGATAAGGTGAAAGAAAATGGAAATGGATCCAAATCCATCAGCATTATATCCAAGAAGAGAAAATCTAATAGCCAGAAAACTGTTGAGGAGAGTGCCAAAGTTAGAAAGGTTTCTCCTTACTTTCAGATTGACAATGTGAAGAAGACCGTCGAAGTAGATGCACTTGATCATGAAAATGAATTTGATTCTGCTGCTTTAATGGGTACTTGTGGATACATGGTGCAAGACAGGGAGGAAGAGAATGGAGATAACATTGCAATTGAAAAGATTAAGTCCAAGTGCAAGGGAAGATACAAGAAGCTTGAGCCTGTTGAGCATGATCCAGTTCATAAGTTTTTGCCATTCTTTCAATGTGACAATGAGAAGAAGGTTGATGCTGATTCACATTTTGAGATTGGATCCATTGCTTCACAAGGTATTGGTAGTAGCTTCCTTAGAGATAAGCTGCTGGAGGATGAAAATGAAATGAAAAATGGAACAATTAAATTCAAGAAGAAGAAAAAGAAGAACAAAGCCTTCACAAATAAGCTGCAAGAAAATGGAAATGATGCTGAAACTTGTAATGTTAAACCCAGGAAGATGGAATCTGTGGTTCAGAAAAATATAGCCCAGGTTGGTGTTAGATATGTTTCCCCTTATTTTCATAATGATAGTGAGGAGAAGATTAAAGGCAAACCATTGGATATGGAAAGCAAATCTGGATCCATTGCTTTACCCACCTTTGGAAATTCCATTGAGAATAAACTGGACGGAAATAATAGTGGGGAGAAGATTAAACAACACGGACTTGATAGTCATATTGATTCTGTTGTGGTTAGATCTGCTTCTGGAGACTTTGAGGAACTGTATGGGAATGGAAATGAAATTGAAATAATTAAAGTTAAATCCAAGAAGAGGCGAAAATCCAATAGTAAAAAAACTTACAAGGAGCATGACAAGGTTCGGAAGGTTTCTCCTTACTTTCAGAATGACAAGGAGAAAACAGTTAATGTAGAAGCGCTTGATCGTGAAAATGTTTTTGATTCAGTTTCTTTAGTGGGTAAGTATGGTGATAAGGTTGCATTTGAAAAATTTAAATTCCAAGGCAAGAAAACATCTGCAAAGAACAAGATATTGGAGCATGCTCAAATTCAAAAGGTTTCTCCTTTCTTTCAAAGTAACAAAGGGAAGAAAGTTGATGATGGATCATGTTGTTATGACAGTGAGATTGGATTCAGTGCTTTACCTGGTACCGGTGGTGGCTTCCTTGAAGATAAGCTGCCAGAGGATGGAAATGCAATTGAGAAGGCAATGACTAAATTGAAAAAGAAGAAAGTCATTGCAAATAAGCTGCAAGAGAATGGAAATGATGCTGAAACTTTTAATGTTAAACCCAAGATGACAAAATCTGTGGTTCAGGAAAATATAGTCCAGGTTGGTGTTAGATATGTCTCCCCTTATTTTCACAATGACAGTGGGAAGAAGTTTAATGTTCAACCATCGAATAAGGAAAGCAAGTCTGAATCCATGGTTTTACCTACCTTTGGAAATTTCGTGGAGGATAAACTGGTGGAAAATAATGGAGGGAAAAATGTTAAACAACAGTCAATTGAAACTCATGCTGATTCTGTTGTGTTAACAGCTGCTTCTGGAAACTTCTCTGAGGATGGACTGCAAAAAATTAGAAATGAAATTGCAACCATTAAAGTTAAATCAAAGAAGAGAAAATCTAATAGCAGGAAAACAGCTGAGGAGCTTGCCAAGGTTCGGAAGGTTTCTCCTTACTTTCAGAACGACAATGAGAAGACAGTTAATGTAAAAGAACATGACCATGAAAGTGACCTTGATTCTGTTGCTTTAATGGGTACTTGTACTTTTGGAGGTAAAATTCCAATTGAAAAGTTTAGATATGAAGGCAAGAGAACATCTAAAAAGGATGAGACAGCTGGGCATACTCAAATTCAAAAAGTTTCTCCTTTCTTTGAAACTGACAATGTGAAGAAGATTGGTGCTGAATCAAGTTGTACTGCTGGTAGGCTCCTTGAACATAAGCTGCAAGAGGATGGAAATGTAACTGAAAATGGAATGATTAATGTCAAGAGGAAAGTCATTTCAAATAAACTGCAAGAGAATGGAAATAATGCCACAACTAGTAAAGTTAAACCCAAGAAGAAAAAACCTCTAGTTCAGAAAAATGGCCATGGTATTAGATATGTTTCCCCGTATTTTTGTAATAATAGTGGTAAGAAGGTTAATGTCAAACCTTTTGATAAGGGAAGCACGTCTGAATCCATTGCTTTGCATACCTGCAAAAACTTCGTAGAGGATAAACTGGAGGAAAATAAATCTAATTGCAGTAACAAATCTATTGAAATTAAAAGATTCCCTCCTGCTTCTGAGAAGTGGGATGAGGCTTACAAAAGAAAAACACCTGATAATACATGGAAGCCTCCACGGTCTGAGATTGTTCTCATTCAAGAGGATCATCTTCATGACCCTTGGAGGGTGTTGGTTATTTGTATGCTTCTCAATCGGACTGCTGGTGGCCAGACAAAAAAGGTTGTGTCAAACTTCTTCAAGTTATGTCCAGATGCAAAATCTTGTACACAAGTTACAAGAGAGGAAATAGAAAAGACAATAAAGACTTTAGGTTTTCAGCACAAAAGGGCAGAAATGCTACAGCGCCTCTCTGAGGAATACTTGGATGAAAGTTGGACTCATGTAACACAACTGCATGGTGTTGGCAAGTATGCTGCCGATGCATATGCTATATTTGTTACAGGAATGTGGGACAGAGTGACACCTACAGATCACATGCTAAACTATTATTGGGAATTCCTCCATAGTATCAAGCATGAATTGTGA
>Glyma13g11614.1 sequence type=predicted peptide gene model=Glyma13g11614 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEYILALPAQKEGSLVDVKKPKMKNEEASNNKKRLMEHDLPKSGNEMGAANTKTNNGKRTSKKHEKEKVPKIYPYFRHNYEKKGDNWEENKDEIATEKIKSKRKRRPKKHEPEGDCEEKIDPESCCYGSDIGLVEDMLLADGKIKSKERRKKKKKKKAVQDKLWENGDDAETKKFKLKKREPQGDNREKADPELCCYGSNIGFVEDMLLADGKIKSKQKKKKKAVQDKLWENGDDTETSKFILKKRESQGDNREKIDPESCCYDCDIEFVEDKLPADGKIKSKEKKNKKVVEDNLWENGDDTEIDKFILTKCEPQGGNEEKIHPESCCGCDIGFAEDKLLADGKIKPKEKKKKKKKVQNKLWENGDDTEISKFILKKRESQGDNVEKIDPESCCYGCHIEFVEDKLPADGKIKSKEKKKKKAVEDELWENGDDAEPSQLKLKKTGPEVHKHKVQVGVRYVSPYFHNDNAKKINFESFDKVKENGNGSKSISIISKKRKSNSQKTVEESAKVRKVSPYFQIDNVKKTVEVDALDHENEFDSAALMGTCGYMVQDREEENGDNIAIEKIKSKCKGRYKKLEPVEHDPVHKFLPFFQCDNEKKVDADSHFEIGSIASQGIGSSFLRDKLLEDENEMKNGTIKFKKKKKKNKAFTNKLQENGNDAETCNVKPRKMESVVQKNIAQVGVRYVSPYFHNDSEEKIKGKPLDMESKSGSIALPTFGNSIENKLDGNNSGEKIKQHGLDSHIDSVVVRSASGDFEELYGNGNEIEIIKVKSKKRRKSNSKKTYKEHDKVRKVSPYFQNDKEKTVNVEALDRENVFDSVSLVGKYGDKVAFEKFKFQGKKTSAKNKILEHAQIQKVSPFFQSNKGKKVDDGSCCYDSEIGFSALPGTGGGFLEDKLPEDGNAIEKAMTKLKKKKVIANKLQENGNDAETFNVKPKMTKSVVQENIVQVGVRYVSPYFHNDSGKKFNVQPSNKESKSESMVLPTFGNFVEDKLVENNGGKNVKQQSIETHADSVVLTAASGNFSEDGLQKIRNEIATIKVKSKKRKSNSRKTAEELAKVRKVSPYFQNDNEKTVNVKEHDHESDLDSVALMGTCTFGGKIPIEKFRYEGKRTSKKDETAGHTQIQKVSPFFETDNVKKIGAESSCTAGRLLEHKLQEDGNVTENGMINVKRKVISNKLQENGNNATTSKVKPKKKKPLVQKNGHGIRYVSPYFCNNSGKKVNVKPFDKGSTSESIALHTCKNFVEDKLEENKSNCSNKSIEIKRFPPASEKWDEAYKRKTPDNTWKPPRSEIVLIQEDHLHDPWRVLVICMLLNRTAGGQTKKVVSNFFKLCPDAKSCTQVTREEIEKTIKTLGFQHKRAEMLQRLSEEYLDESWTHVTQLHGVGKYAADAYAIFVTGMWDRVTPTDHMLNYYWEFLHSIKHEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
