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Report for Sequence Feature Glyma13g11570

Feature Type:gene_model
Chromosome:Gm13
Start:14247199
stop:14248972
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g11570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G04240AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:1461816-1462304 REVERSE LENGTH=162 SoyBaseE_val: 2.00E-51ISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009687GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid metabolic process SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22937Panther RING FINGER CONTAINING PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_C6SZE8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZE8_SOYBN SoyBaseE_val: 2.00E-105ISS
UniRef100_G7J8T2UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL4K n=1 Tax=Medicago truncatula RepID=G7J8T2_MEDTR SoyBaseE_val: 6.00E-68ISS

Expression Patterns of Glyma13g11570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g11570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g009100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g11570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g11570
>Glyma13g11570.4   sequence type=transcript   gene model=Glyma13g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAGATACTCAACTTGTGTGTACTGTGTATGTATGGTTCATCCCTCTATAAAGCAAAGGGGTTGCATCAACTCCAGTATGAGTCATGAGATACACTTTTCAGTTCATGAAACACAACAGTAATCCTCAAATTCTCTCTCTATTCAAAGAGAAAAAATCATCATCCACTTGCAACCAACACAATTTGGTATCAAAATGGGCCTGTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTATGTGTGCTTCTTGTAAACACTGCCTTGTCTATATCCATATTCAAAGGCATTGTTAGGACAATTCTACAAATTGTCGGTATCCGCGTTTCGTCGTTGTCTCCTTCACCAGACATCTCCCGAAACCCACCTGAGCCATTAGAATTCAACCTCAGCCCCTCGGAGGGTTTCATTGAAGAGTTCAGAAGCAGGACACCAACACTTAGGTTTGGCAGCATGTGTGGCAGTAAACAACCTCAACATGAATGTTGTTGTGTGTGTCTCACAAAGTTTGAACCAGAATCTGAGATAAACTGTTTATCATGTGGCCATATTTTTCACAAAGTGTGCATGGAGAAGTGGTTGGACTATTGGAACATTACATGCCCACTTTGCAGGACTTCCTTGATGCCTGAAGATGATGCATCTTGCTTTTGGTAAAAAAACATGTACATATAAAAGAAAAGAGATATATTCATGTACAGTATATATTGTATGTACATAGTTGTGGCAGTGTTGATGTTCCCTTGGTCTTGGCTCTAACTTTTTTAACCCTTTACTTTTTTATGATTGTTAAAGTGTGTGGAGGGTCTTGTTTTCCTTTGTTTCTCTGTATCTGGTGTTGCCACATATGAGTCGAGGGATCTACTTTTTTGGGATAATTGTGTTTGTCCATAATATCCTCTTGATATGTAAACAGACATCATATACAGACCCTTTTGCTTTTGCCACATGTACATGGATAATGTAGTCGGTAGATTACCTTTTAGTCCTTAAAGTGTTGTCACGAGTCCTCTTTCTAATCAAATTAAGGAAGTTCAAAAAACTGGCATTTGCCAATCCGATAATGTTTGTGCA
Coding sequences of Glyma13g11570
>Glyma13g11570.3   sequence type=CDS   gene model=Glyma13g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCCTGTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTATGTGTGCTTCTTGTAAACACTGCCTTGTCTATATCCATATTCAAAGGCATTGTTAGGACAATTCTACAAATTGTCGGTATCCGCGTTTCGTCGTTGTCTCCTTCACCAGACATCTCCCGAAACCCACCTGAGCCATTAGAATTCAACCTCAGCCCCTCGGAGGGTTTCATTGAAGAGTTCAGAAGCAGGACACCAACACTTAGGTTTGGCAGCATGTGTGGCAGTAAACAACCTCAACATGAATGTTGTTGTGTGTGTCTCACAAAGTTTGAACCAGAATCTGAGATAAACTGTTTATCATGTGGCCATATTTTTCACAAAGTGTGCATGGAGAAGTGGTTGGACTATTGGAACATTACATGCCCACTTTGCAGGACTTCCTTGATGCCTGAAGATGATGCATCTTGCTTTTGGTAA

>Glyma13g11570.4   sequence type=CDS   gene model=Glyma13g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCCTGTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTATGTGTGCTTCTTGTAAACACTGCCTTGTCTATATCCATATTCAAAGGCATTGTTAGGACAATTCTACAAATTGTCGGTATCCGCGTTTCGTCGTTGTCTCCTTCACCAGACATCTCCCGAAACCCACCTGAGCCATTAGAATTCAACCTCAGCCCCTCGGAGGGTTTCATTGAAGAGTTCAGAAGCAGGACACCAACACTTAGGTTTGGCAGCATGTGTGGCAGTAAACAACCTCAACATGAATGTTGTTGTGTGTGTCTCACAAAGTTTGAACCAGAATCTGAGATAAACTGTTTATCATGTGGCCATATTTTTCACAAAGTGTGCATGGAGAAGTGGTTGGACTATTGGAACATTACATGCCCACTTTGCAGGACTTCCTTGATGCCTGAAGATGATGCATCTTGCTTTTGGTAA
Predicted protein sequences of Glyma13g11570
>Glyma13g11570.3   sequence type=predicted peptide   gene model=Glyma13g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRTILQIVGIRVSSLSPSPDISRNPPEPLEFNLSPSEGFIEEFRSRTPTLRFGSMCGSKQPQHECCCVCLTKFEPESEINCLSCGHIFHKVCMEKWLDYWNITCPLCRTSLMPEDDASCFW*

>Glyma13g11570.4   sequence type=predicted peptide   gene model=Glyma13g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRTILQIVGIRVSSLSPSPDISRNPPEPLEFNLSPSEGFIEEFRSRTPTLRFGSMCGSKQPQHECCCVCLTKFEPESEINCLSCGHIFHKVCMEKWLDYWNITCPLCRTSLMPEDDASCFW*






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