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Report for Sequence Feature Glyma13g11561

Feature Type:gene_model
Chromosome:Gm13
Start:14245294
stop:14245949
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22460AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:7443659-7445269 REVERSE LENGTH=340 SoyBaseE_val: 2.00E-42ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR10992Panther ALPHA/BETA HYDROLASE RELATED JGI ISS
PTHR10992:SF198Panther ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN JGI ISS
UniRef100_B9SCS4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SCS4_RICCO SoyBaseE_val: 7.00E-54ISS
UniRef100_I3SZW9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Medicago truncatula RepID=I3SZW9_MEDTR SoyBaseE_val: 2.00E-58ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g11561 not represented in the dataset

Glyma13g11561 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g009000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g11561.1   sequence type=CDS   gene model=Glyma13g11561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCAAGAGCAGCAATAGTGTTACTCATAGGTCTTGTGGGAATGTTTTACCAGGGCACTCAACTCCCCCCTTCAAACAACAGTGATTCATCAGATGATGGTGTTCCAGTTTCACCACCAAGAGTCAGACTCAGAGATGGGAGGTACTTGGCTTATAGAGAAAAGGGTGTCCCCAAGGACCAAGCAAAACACAGCATCATCATTGTACATGGCTTTGGAAGCTCCAAAGATATGAATTTTCTGGCACCCCAGGAACTAATAGATGAATTGGGTATATATATTCTGCAATATGATCGAGCTGGGTATGGAGAGAGTGATCCAAACCCCAAACGCTCACTGAAAAGTGAAGCACTTGACATTGAAGAGCTTGCTGATCTGTTACAGATA

>Glyma13g11561.1   sequence type=predicted peptide   gene model=Glyma13g11561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSRAAIVLLIGLVGMFYQGTQLPPSNNSDSSDDGVPVSPPRVRLRDGRYLAYREKGVPKDQAKHSIIIVHGFGSSKDMNFLAPQELIDELGIYILQYDRAGYGESDPNPKRSLKSEALDIEELADLLQI







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