Report for Sequence Feature Glyma13g11480
Feature Type: gene_model
Chromosome: Gm13
Start: 14180759
stop: 14183836
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g11480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G47980 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; O
SoyBase E_val: 1.00E-100 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1LXP0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LXP0_SOYBN
SoyBase E_val: 1.00E-171 ISS
UniRef100_Q01L47 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: H0502B11.4 protein n=1 Tax=Oryza sativa RepID=Q01L47_ORYSA
SoyBase E_val: 1.00E-86 ISS
Expression Patterns of Glyma13g11480
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma13g11480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g008600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g11480
Coding sequences of Glyma13g11480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g11480.1 sequence type=CDS gene model=Glyma13g11480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATAGTCCTAAACCAACAGCCCCAGAATCAGATGTCGATCTGTTAGAATTTCCCTTAAACTTAGAATACTTGGAGGCTGAATTTTTCTTGTTTGGGTCTTTGGGTCATGGATTGGATGTGGTTGCTCCAAATTTAATTGAGGGAGGACCCCCTCCCATTGGTGTCAGATTGGCCAGACTTGGCAGCCTTGTCAGGAATATTATCTTGCAGTTTGGTTTCCAGGAAGTTGGACACTTGAGGGCCATAAAGAGCACAGTGAGAGGGTTTCCTAGGCCATTGCTGGATCTAAGCACAACATCTTTTGCCAAACTTGCATCTTATGTGATTCCCTATGTTGGCCTCACGGGTTATGTTGGTGCTAATCCACTGTTGCAAAATGCTACTTCCAAGAAGTCTTGGCAAGATGCGGTTATTCGAGCATTGTTGTATGAACATCGAACGTTATCGGTGCAACCATACAATGTGACTGTGGCAGAGTTTACAGATCGCATATCAATGCTTAGGAACAACCTAGGAGGTTCAGGTTTGAAAGATGAGGGTCTTGTGGTGCCTAGAGAGCAAGGTGCTGAGGGTAGAGTCACCGACAACATTCTCGCCGGCGACAAAGATTCACTGTCATATCCCAGGACTCCAAAGGAAATATTAAGGATAATATATGGAGGAGGTGATGAACATGTTCCCGGTGGCTTCTATCCTAAAGGAGCAAGTGGTAGAATAGTTAAATATTACTTGAAAACAACCTAA
Predicted protein sequences of Glyma13g11480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g11480.1 sequence type=predicted peptide gene model=Glyma13g11480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNSPKPTAPESDVDLLEFPLNLEYLEAEFFLFGSLGHGLDVVAPNLIEGGPPPIGVRLARLGSLVRNIILQFGFQEVGHLRAIKSTVRGFPRPLLDLSTTSFAKLASYVIPYVGLTGYVGANPLLQNATSKKSWQDAVIRALLYEHRTLSVQPYNVTVAEFTDRISMLRNNLGGSGLKDEGLVVPREQGAEGRVTDNILAGDKDSLSYPRTPKEILRIIYGGGDEHVPGGFYPKGASGRIVKYYLKTT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
