SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11220 | AT | Annotation by Michelle Graham. TAIR10: Paxneb protein-related | chr3:3513830-3515990 REVERSE LENGTH=355 | SoyBase | E_val: 5.00E-159 | ISS |
| GO:0006357 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0010928 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0031538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of anthocyanin metabolic process | SoyBase | N/A | ISS |
| GO:0035265 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ growth | SoyBase | N/A | ISS |
| GO:0043609 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of carbon utilization | SoyBase | N/A | ISS |
| GO:0071329 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:2000024 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of leaf development | SoyBase | N/A | ISS |
| GO:0033588 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Elongator holoenzyme complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3949 | KOG | RNA polymerase II elongator complex, subunit ELP4 | JGI | ISS | |
| PTHR12896 | Panther | PAX6 NEIGHBOR PROTEIN (PAXNEB) | JGI | ISS | |
| PF05625 | PFAM | PAXNEB protein | JGI | ISS | |
| UniRef100_G7ZVS3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elongator complex protein n=1 Tax=Medicago truncatula RepID=G7ZVS3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LXN7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXN7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g11400 not represented in the dataset |
Glyma13g11400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g008300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g11400.2 sequence type=transcript gene model=Glyma13g11400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAGAAATCTTATGCCTGTTCTACTTCTGGGACTTGTTCTTCCACCCAACGAGTGGAGTTAAATTCTAACCCAACAAACAAACACAACAAATTCAAATTGTGCGAAAAATAAAACAGAAAGTCTCTTGAACAAAAACTTCGAACTCACCAACTCAAACTCGCTGCTTTCAAACTTCAAAGTAAAACCCAACTCTATTTCCTTCTCTCAGGTCTCAGAGTGGCAAACTGTAAAGTTTTGATGCAGAATGGCTGCAACCAGGGCTCGAGTTAGTAGCTTCTCTCGCAATGTATCAACTGTGACTTCTCAGAATCATGGACTTAAGCATGGCCCTAATGGGACAATGTTCATTTCATCTGGGATTCCAGATCTGGACAAGATTTTAGGTGGTGGTTTTTCTCTGGGTAGCCTTGTCATGGTTATGGAAGATCCTGAAGCACCTCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTGCAAAAACAGCCACTCTTGTATGCTAGTGCATCTAGAGATCCTAAAAGTTTTCTCGGTACTTTGCCTAGTCCGGCGTCACCCAAAGGGGATAATAAATCTTCAGATCTTAGCCATGAAAAGGATCTAAGAATCGCTTGGCAATACAAAAAGTATTTTGGTGAGCCTCAGCTAAATCTGAACACTAATAATGGTGGTCAGCATGATTACTGTAATGATTTTGACTTGAGAAAGCCCCTGGACCGGCACTTTTTTAGTGGCAATAATGTAGATTGTGTTAGCATCAAAGATTCTCCTAACCTTACTGCTCTTCAAGATTGTTGTGCTGGATTTCTAGCTAAATTCTCAAGAAATGAAGGCAGCATTTCCTCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTCCACAATGCAAGTATTCAAATGAGGAGTGGCATATGCTTTCTTTTATTAGGTCCCTAAAGGGCATGGCCCGGTCTTCAAACGCTGTTATTGTTGTAACCTTTCCACCTTCACTTCTTCCTCCATCTTGTTCAAAAAGATTGCAGCATATGGCAGACACCTTGCTTTCTGTCAAAGCCATTCCAGATGAGGATAAGGAACTTGCAAAACTCCTCACTGGTTACCAGGATATGATTGGGCTTCTAAATGTACACAAAGTTGCACGGTTAAATACACAGTTCACAACGTGACATGCATACAACTGTTTACATCCATTTACTCCATTGAATATCCCTTTCTGGTATGCTTATATACTCTACCTATCTTCCTTTTTTCTGTCACTCATGCAGTCTTAGCACCTGCATTTATGTCCACACACATAATATCTTAAGCAATAGCTTTAAGCATTACGTGCATTATTGCCCTTTATTAATTTGTTTGATAACTGGTTTTGATATTGTACGTGTGATAGATCTTTCCCCTGCCTTTTTGTAAAGTTAAGCGAATTGGAAACTTGATTGGAGGAACAATACATTTCTAGAAGCTACCTTTTTCTTTCATTCTCACATATTTGATTTCCAACATGCAGGTTCCTGTGATTCTGGAGGCCACAACATTCTCCATAAAATTGCAAAAACGAAGGTTTTTGGTTTTAGAATGTCTAAATCAAGCCCCAGTTGATGGTTCAAGTGGCAGTTCGTATGGCACATCTGGCGGTTGTTCTGGGTCAACTAAAGCTGGACCACTTGATTTTTAGACTATACCTTATTTATAACTGAAGGCTTTTATCAACCAAAAATACGATATAGCCATAGTGAGTCAGGCTCAATGTTTTTCTTAGTGCTTGAAATTTAGCCTTCTAAATTGTGTTACTCCTTTTCTTTTTTGTTCTTTTGATGATTAATTGGTTGCACCATTGGTTCGTCTGCAATGTACGGACATTTTCTTTTGGTGAATTCTGTGGTGGACCATTTAAACACGTCACAGTGTCAAGATATTTTTTAAAATTGTAAAATAGTCCCTATGACTAATGGACACCATAAAAAATGAAAGCTGGTGAGTTTATGAACAACTTAAAATCTGGAGATTAAAACAGAAGAGCGGTTTCATGATTTATGTACAAGTTGAATTTTTGGTCGTAGGGAAAGAATCCGTCTAAG
>Glyma13g11400.1 sequence type=CDS gene model=Glyma13g11400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCAACCAGGGCTCGAGTTAGTAGCTTCTCTCGCAATGTATCAACTGTGACTTCTCAGAATCATGGACTTAAGCATGGCCCTAATGGGACAATGTTCATTTCATCTGGGATTCCAGATCTGGACAAGATTTTAGGTGGTGGTTTTTCTCTGGGTAGCCTTGTCATGGTTATGGAAGATCCTGAAGCACCTCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTGCAAAAACAGCCACTCTTGTATGCTAGTGCATCTAGAGATCCTAAAAGTTTTCTCGGTACTTTGCCTAGTCCGGCGTCACCCAAAGGGGATAATAAATCTTCAGATCTTAGCCATGAAAAGGATCTAAGAATCGCTTGGCAATACAAAAAGTATTTTGGTGAGCCTCAGCTAAATCTGAACACTAATAATGGTGGTCAGCATGATTACTGTAATGATTTTGACTTGAGAAAGCCCCTGGACCGGCACTTTTTTAGTGGCAATAATGTAGATTGTGTTAGCATCAAAGATTCTCCTAACCTTACTGCTCTTCAAGATTGTTGTGCTGGATTTCTAGCTAAATTCTCAAGAAATGAAGGCAGCATTTCCTCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTCCACAATGCAAGTATTCAAATGAGGAGTGGCATATGCTTTCTTTTATTAGGTCCCTAAAGGGCATGGCCCGGTCTTCAAACGCTGTTATTGTTGTAACCTTTCCACCTTCACTTCTTCCTCCATCTTGTTCAAAAAGATTGCAGCATATGGCAGACACCTTGCTTTCTGTCAAAGCCATTCCAGATGAGGATAAGGAACTTGCAAAACTCCTCACTGGTTACCAGGATATGATTGGGCTTCTAAATGTACACAAAGTTGCACGGTTAAATACACAGGTTCCTGTGATTCTGGAGGCCACAACATTCTCCATAAAATTGCAAAAACGAAGGTTTTTGGTTTTAGAATGTCTAAATCAAGCCCCAGTTGATGGTTCAAGTGGCAGTTCGTATGGCACATCTGGCGGTTGTTCTGGGTCAACTAAAGCTGGACCACTTGATTTTTAG >Glyma13g11400.2 sequence type=CDS gene model=Glyma13g11400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCAACCAGGGCTCGAGTTAGTAGCTTCTCTCGCAATGTATCAACTGTGACTTCTCAGAATCATGGACTTAAGCATGGCCCTAATGGGACAATGTTCATTTCATCTGGGATTCCAGATCTGGACAAGATTTTAGGTGGTGGTTTTTCTCTGGGTAGCCTTGTCATGGTTATGGAAGATCCTGAAGCACCTCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTGCAAAAACAGCCACTCTTGTATGCTAGTGCATCTAGAGATCCTAAAAGTTTTCTCGGTACTTTGCCTAGTCCGGCGTCACCCAAAGGGGATAATAAATCTTCAGATCTTAGCCATGAAAAGGATCTAAGAATCGCTTGGCAATACAAAAAGTATTTTGGTGAGCCTCAGCTAAATCTGAACACTAATAATGGTGGTCAGCATGATTACTGTAATGATTTTGACTTGAGAAAGCCCCTGGACCGGCACTTTTTTAGTGGCAATAATGTAGATTGTGTTAGCATCAAAGATTCTCCTAACCTTACTGCTCTTCAAGATTGTTGTGCTGGATTTCTAGCTAAATTCTCAAGAAATGAAGGCAGCATTTCCTCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTCCACAATGCAAGTATTCAAATGAGGAGTGGCATATGCTTTCTTTTATTAGGTCCCTAAAGGGCATGGCCCGGTCTTCAAACGCTGTTATTGTTGTAACCTTTCCACCTTCACTTCTTCCTCCATCTTGTTCAAAAAGATTGCAGCATATGGCAGACACCTTGCTTTCTGTCAAAGCCATTCCAGATGAGGATAAGGAACTTGCAAAACTCCTCACTGGTTACCAGGATATGATTGGGCTTCTAAATGTACACAAAGTTGCACGGTTAAATACACAGTTCACAACGTGA
>Glyma13g11400.1 sequence type=predicted peptide gene model=Glyma13g11400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATRARVSSFSRNVSTVTSQNHGLKHGPNGTMFISSGIPDLDKILGGGFSLGSLVMVMEDPEAPHHMLLLRNFMSQGLVQKQPLLYASASRDPKSFLGTLPSPASPKGDNKSSDLSHEKDLRIAWQYKKYFGEPQLNLNTNNGGQHDYCNDFDLRKPLDRHFFSGNNVDCVSIKDSPNLTALQDCCAGFLAKFSRNEGSISSAGRIAIQSFCSPQCKYSNEEWHMLSFIRSLKGMARSSNAVIVVTFPPSLLPPSCSKRLQHMADTLLSVKAIPDEDKELAKLLTGYQDMIGLLNVHKVARLNTQVPVILEATTFSIKLQKRRFLVLECLNQAPVDGSSGSSYGTSGGCSGSTKAGPLDF* >Glyma13g11400.2 sequence type=predicted peptide gene model=Glyma13g11400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATRARVSSFSRNVSTVTSQNHGLKHGPNGTMFISSGIPDLDKILGGGFSLGSLVMVMEDPEAPHHMLLLRNFMSQGLVQKQPLLYASASRDPKSFLGTLPSPASPKGDNKSSDLSHEKDLRIAWQYKKYFGEPQLNLNTNNGGQHDYCNDFDLRKPLDRHFFSGNNVDCVSIKDSPNLTALQDCCAGFLAKFSRNEGSISSAGRIAIQSFCSPQCKYSNEEWHMLSFIRSLKGMARSSNAVIVVTFPPSLLPPSCSKRLQHMADTLLSVKAIPDEDKELAKLLTGYQDMIGLLNVHKVARLNTQFTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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