Glyma13g11390 - SoyBase

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Report for Sequence Feature Glyma13g11390

Feature Type:	gene_model
Chromosome:	Gm13
Start:	14048042
stop:	14055951
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g11390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04600	AT	Annotation by Michelle Graham. TAIR10: Nucleotidylyl transferase superfamily protein \| chr3:1243152-1245958 FORWARD LENGTH=402	SoyBase	E_val: 0	ISS
GO:0006418	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation	SoyBase	N/A	ISS
GO:0006436	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophanyl-tRNA aminoacylation	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004812	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity	SoyBase	N/A	ISS
GO:0004830	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tryptophan-tRNA ligase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG2145	KOG	Cytoplasmic tryptophanyl-tRNA synthetase	JGI		ISS
PTHR10055	Panther	TRYPTOPHANYL-TRNA SYNTHETASE	JGI		ISS
PTHR10055:SF1	Panther	TRYPTOPHANYL-TRNA SYNTHETASE	JGI		ISS
PF00579	PFAM	tRNA synthetases class I (W and Y)	JGI		ISS
UniRef100_G7ZVT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tryptophanyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7ZVT5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LXN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXN6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g11390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g11390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g008200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g11390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g11390

Limit To All Plant Sequences

>Glyma13g11390.1   sequence type=CDS   gene model=Glyma13g11390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGCAACAACAGAGAGCGAGAAGAAGAAGCGAGAAGAAGAAGAGGAACCAGAACAAGTTGTGAACCCATGGGAAGTTTCAGCCAAAGGTAAAATCGATTACGACAAACTCATAGATCGTTTCGGTTGCCAGAAGCTCGGCGAAGCCCTAATTTCGCGTCTCGAGCAACTCACCTCTCGCACTCCTCACGTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCGCGATTTCGCGGAGATTCTGGACGCGTACGAGAGGGGCGACAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCCGAAGCGTTGCATTTGGGACACTTGATTCCGTTCATGTTCACTAAGTATTTGCAAGATGTGTTTAAGGTTCCTCTGGTTATACAGCTCACTGATGATGAGAAGTTCTTCTGGAAAAATCTTACTATAGAAGAGTGCAGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACGTTCATCTTCTCTGATTTCAATTATGTTGGCGGTTCCTTCTACAAGAACATGTGTGAGGTTGGAAAGCGTGTGACTTATAACCAGGCTGTTGGCATCTTTGGTTTCGCTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCAGTTCCATCATTTCCTAGTTCATTTCCTCACCTATTTTCTGGAAAAGAGAATCTTCGTTGTTTAATTCCTTGTGCAATTGACCAGGATCCATATTTTAGAATGACACGTGATGTTGCTCCTAAAATGGGTTTCCACAAGCCAGCCTTGATTGAATCATTATTCTTCCCAGCATTACAGGGAGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTGACCGATTCTGCAAAAGATATAAAGAACAAGGTAAACAAACATGCATTTTCTGGTGGGCAAGATTCTATAGAGAAACATAGGCAATTAGGGGCTAATCTTGAGGTAGATATACCAGTCAAATACCTTACTTTTTTCTTAGAAGATGATGATGAACTTGAACACATAAAGAAGGAATATGGAGAAGGACGCATGTTAACTGGCGAGGTAAAGCAGCGGCTAGTTCAAGTTTTGACTGAACTAGTGGAGAGGCATCGTAGGGCTCGGGCTTCTGTGACTGAAGAGATGGTGGATGCATTTATGGCTATCAGACCACTTCCCCACATGTTTAGCTGA

Predicted protein sequences of Glyma13g11390

Limit To All Plant Sequences

>Glyma13g11390.1   sequence type=predicted peptide   gene model=Glyma13g11390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTATTESEKKKREEEEEPEQVVNPWEVSAKGKIDYDKLIDRFGCQKLGEALISRLEQLTSRTPHVFLRRGVFFAHRDFAEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDVFKVPLVIQLTDDEKFFWKNLTIEECRRLARENAKDIIACGFDISKTFIFSDFNYVGGSFYKNMCEVGKRVTYNQAVGIFGFAGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCAIDQDPYFRMTRDVAPKMGFHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNKHAFSGGQDSIEKHRQLGANLEVDIPVKYLTFFLEDDDELEHIKKEYGEGRMLTGEVKQRLVQVLTELVERHRRARASVTEEMVDAFMAIRPLPHMFS*

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