SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G04600 | AT | Annotation by Michelle Graham. TAIR10: Nucleotidylyl transferase superfamily protein | chr3:1243152-1245958 FORWARD LENGTH=402 | SoyBase | E_val: 0 | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006436 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophanyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004830 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tryptophan-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG2145 | KOG | Cytoplasmic tryptophanyl-tRNA synthetase | JGI | ISS | |
| PTHR10055 | Panther | TRYPTOPHANYL-TRNA SYNTHETASE | JGI | ISS | |
| PTHR10055:SF1 | Panther | TRYPTOPHANYL-TRNA SYNTHETASE | JGI | ISS | |
| PF00579 | PFAM | tRNA synthetases class I (W and Y) | JGI | ISS | |
| UniRef100_G7ZVT5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tryptophanyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7ZVT5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LXN6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXN6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g11390 not represented in the dataset |
Glyma13g11390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g008200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g11390.1 sequence type=CDS gene model=Glyma13g11390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGCAACAACAGAGAGCGAGAAGAAGAAGCGAGAAGAAGAAGAGGAACCAGAACAAGTTGTGAACCCATGGGAAGTTTCAGCCAAAGGTAAAATCGATTACGACAAACTCATAGATCGTTTCGGTTGCCAGAAGCTCGGCGAAGCCCTAATTTCGCGTCTCGAGCAACTCACCTCTCGCACTCCTCACGTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCGCGATTTCGCGGAGATTCTGGACGCGTACGAGAGGGGCGACAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCCGAAGCGTTGCATTTGGGACACTTGATTCCGTTCATGTTCACTAAGTATTTGCAAGATGTGTTTAAGGTTCCTCTGGTTATACAGCTCACTGATGATGAGAAGTTCTTCTGGAAAAATCTTACTATAGAAGAGTGCAGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACGTTCATCTTCTCTGATTTCAATTATGTTGGCGGTTCCTTCTACAAGAACATGTGTGAGGTTGGAAAGCGTGTGACTTATAACCAGGCTGTTGGCATCTTTGGTTTCGCTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCAGTTCCATCATTTCCTAGTTCATTTCCTCACCTATTTTCTGGAAAAGAGAATCTTCGTTGTTTAATTCCTTGTGCAATTGACCAGGATCCATATTTTAGAATGACACGTGATGTTGCTCCTAAAATGGGTTTCCACAAGCCAGCCTTGATTGAATCATTATTCTTCCCAGCATTACAGGGAGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTGACCGATTCTGCAAAAGATATAAAGAACAAGGTAAACAAACATGCATTTTCTGGTGGGCAAGATTCTATAGAGAAACATAGGCAATTAGGGGCTAATCTTGAGGTAGATATACCAGTCAAATACCTTACTTTTTTCTTAGAAGATGATGATGAACTTGAACACATAAAGAAGGAATATGGAGAAGGACGCATGTTAACTGGCGAGGTAAAGCAGCGGCTAGTTCAAGTTTTGACTGAACTAGTGGAGAGGCATCGTAGGGCTCGGGCTTCTGTGACTGAAGAGATGGTGGATGCATTTATGGCTATCAGACCACTTCCCCACATGTTTAGCTGA
>Glyma13g11390.1 sequence type=predicted peptide gene model=Glyma13g11390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTATTESEKKKREEEEEPEQVVNPWEVSAKGKIDYDKLIDRFGCQKLGEALISRLEQLTSRTPHVFLRRGVFFAHRDFAEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDVFKVPLVIQLTDDEKFFWKNLTIEECRRLARENAKDIIACGFDISKTFIFSDFNYVGGSFYKNMCEVGKRVTYNQAVGIFGFAGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCAIDQDPYFRMTRDVAPKMGFHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNKHAFSGGQDSIEKHRQLGANLEVDIPVKYLTFFLEDDDELEHIKKEYGEGRMLTGEVKQRLVQVLTELVERHRRARASVTEEMVDAFMAIRPLPHMFS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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