Glyma13g11243 - SoyBase

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Report for Sequence Feature Glyma13g11243

Feature Type:	gene_model
Chromosome:	Gm13
Start:	13609072
stop:	13610326
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g11243

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40520	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 3679 Blast hits to 2474 proteins in 390 species: Archae - 10; Bacteria - 571; Metazoa - 1012; Fungi - 528; Plants - 214; Viruses - 74; Other Eukaryotes - 1270 (source: NCBI BLink). \| chr5:16231515-16233546 REVERSE LENGTH=574	SoyBase	E_val: 8.00E-22	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1LQB4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQB4_SOYBN	SoyBase	E_val: 3.00E-49	ISS

Expression Patterns of Glyma13g11243

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g11243 not represented in the dataset	Glyma13g11243 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g11243 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma13g11243

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g11243

Limit To All Plant Sequences

>Glyma13g11243.1   sequence type=CDS   gene model=Glyma13g11243   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTATGAGTATGTAAAAACTCATGTTGAAGAAGCCTTTGGAACGCACCACCGCATTGAACCAGAGAATCATGTCACAGAGGACGATGATGTGGATTTGATTCAAATACCGAACATTAAAAGGTTGATATCGTCATCGTCGTGTCTTGATAATTTGACTACAAAGGGTCTCTACCTTCTTGCTATGGTAGTTACTGGTGGTTCATTCAATTCTGAAATAACTCGTTGCAAATTGAAAAAAGGTTATCAAGGGTTCTCTTTCAAGTGCTATAAGAAAGTAGTGACAGTGGCAGAGCTAAGAAGTTTACAGCTTCTCATAGAGCTGAAGGCTGTAATATCAAATAGATCCATACGCACAGCTTTTGTAACTTTTTTTATTGAATTTCTTTTTGACTGCGGTGATATGGACAGTGTTCCAAAGTCTCTATCACAGACCCTAGATGTTATTAACAGAGGCTCTAATAGCTGCATGAATCATGTATTATTCAAGAAGTATATTGAGGAAGAAGTTGACTGCATACTAAACATGAGTGCTTTGACAAAACAAACTGTATTGGATTTGTTGCCCGATGATGAATTTGATAAGGACTTTACTGATGCTTACTTGGAGCAATTGGAAGAAAGTGATTACAGCGGCAGCAATGAGGATGATAATGATAGTCAACCTCTGGAGGATATACACAATTCAGAAATGAAACATCTGGTTCAATGA

Predicted protein sequences of Glyma13g11243

Limit To All Plant Sequences

>Glyma13g11243.1   sequence type=predicted peptide   gene model=Glyma13g11243   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYEYVKTHVEEAFGTHHRIEPENHVTEDDDVDLIQIPNIKRLISSSSCLDNLTTKGLYLLAMVVTGGSFNSEITRCKLKKGYQGFSFKCYKKVVTVAELRSLQLLIELKAVISNRSIRTAFVTFFIEFLFDCGDMDSVPKSLSQTLDVINRGSNSCMNHVLFKKYIEEEVDCILNMSALTKQTVLDLLPDDEFDKDFTDAYLEQLEESDYSGSNEDDNDSQPLEDIHNSEMKHLVQ*

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