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Report for Sequence Feature Glyma13g11230

Feature Type:gene_model
Chromosome:Gm13
Start:13599737
stop:13601256
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g11230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G04480AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1554282-1555514 REVERSE LENGTH=247 SoyBaseE_val: 3.00E-18ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LXM6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXM6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FFL6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAD25831.1 n=2 Tax=Arabidopsis thaliana RepID=Q9FFL6_ARATH SoyBaseE_val: 2.00E-15ISS

Expression Patterns of Glyma13g11230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g11230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g006500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g11230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g11230
>Glyma13g11230.1   sequence type=CDS   gene model=Glyma13g11230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTGGTGGAAAAGCAAAGTAGCACACCAAATGCTTCTTTCATGTTTTTGCATATTCAGGAATATCACAATATTTACACCCTCATGGATCACTGTTCCTCTTGCTCTCTTGCTGCTTTTTTCCAGTTACAAACTGGTTGGATTCATGTTCTTCTCCTCTCTCCTCTTCACATCTCTAGCACTGCTTTTGTCCACTTTTCTTCTTATCTTCTGGAAGCACAAGGCAGTACCAAATGATGAACTTGCTGAAGGAAATGGTTTCATTTTGAGTACTACTACTTCTGAGGAGAAGATCTCACATGGAAGGGAAAGTGCTGTTGCTATTGCACCAACCCCAATGCACAAGAATGCTGAAACTGTTGTGACACAAGCAAAGGAAAGTGAAGAAGTTAGTGATGATAAATGCCAAGAAGAAGGGTTGTTTTTGTCCACTTCTGAAGAAGTAGATCACACACTTTCTGATGAGTGCTCAGATGGGACAATTTCTGATGAGGACAGCCTCATAGAGATTGCACTTCCAAGTGGACACTTTGTGGGTCATAATCAGAACAAAGAAGACTCCAATTCCAAGTACAACAACTGCTGCACCTTGCAACAGAAGAAGAGGGAGTTATCAAGTGCTCATGAGGCCCTTTTCAACCAACATAGCCTGATGGAATTCTTGGCAGAGTTTAATGAAATGAATGAGGAAGATAACTTGATAGAGATTGACATAGCCATGGGTTCTATCAAGTGCTCAAGGTTTGAAATAGAAGCATAA
Predicted protein sequences of Glyma13g11230
>Glyma13g11230.1   sequence type=predicted peptide   gene model=Glyma13g11230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWWKSKVAHQMLLSCFCIFRNITIFTPSWITVPLALLLLFSSYKLVGFMFFSSLLFTSLALLLSTFLLIFWKHKAVPNDELAEGNGFILSTTTSEEKISHGRESAVAIAPTPMHKNAETVVTQAKESEEVSDDKCQEEGLFLSTSEEVDHTLSDECSDGTISDEDSLIEIALPSGHFVGHNQNKEDSNSKYNNCCTLQQKKRELSSAHEALFNQHSLMEFLAEFNEMNEEDNLIEIDIAMGSIKCSRFEIEA*






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