Glyma13g10851 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g10851): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g10851): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma13g10851

Feature Type:	gene_model
Chromosome:	Gm13
Start:	13150593
stop:	13151972
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Expression Patterns of Glyma13g10851

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g10851 not represented in the dataset	Glyma13g10851 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10851 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g005200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10851

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g10851

Limit To All Plant Sequences

>Glyma13g10851.2   sequence type=transcript   gene model=Glyma13g10851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTGGAGTAATCTATGCTTCTCTTTTGTTCTATATGTGACGTCCAAGTTATTAATGCCTATATTCCCTATCGGGCAATGAATTACTTAGAACGCTTCATTTCGAGGAATACATTATCGGATTTGGAAGGGCGAAGCACATGTGATAAAGTTTGATTGGTTGTAGTTTGTTGTTTCACACTTTCCTCCAAGATGAGAACAGAGAATTTCATGCTCAATGAATGTCTGGAGGGGGAGATCTACTGTGTCAGACATCTTGTAGAGCTCTGTCATAAGAGGGACATTAAGACAATAAGTGATAATGGAAAGGAAGGAGCAGAAGCACCAGAGAGGAAGTTGATGAGTTTTAAGCTGCAGTGGCCGCAAATGAAAGTTCATCCTGAAGAGTTACTTTGTAAAACAAACTGGTGTTAGTGCACCATCGTGTAGTTATAGCCTTGTAGCCTACAAAAGGTAGATTAGACGCAGCATATCTATGTTTTTTTTTATAGACCACAAACACGAGAGTTAGGTAGAATTATTATGGGACAACAAACCTAAACACAGGCACACAACTATTTGTATATGATTAAACACTAGTTTATTTTAATGCATCTTTTAAAACATTTAATTAATTTTGAATATTTATTTCTACCGGGCAATGCACAAGGCACAAGGACTAATTCTATCAATTTTTATAAGTATAAGG

>Glyma13g10851.3   sequence type=transcript   gene model=Glyma13g10851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTGGAGTAATCTATGCTTCTCTTTTGTTCTATATGTGACGTCCAAGTTATTAATGCCTATATTCCCTATCGGGCAATGAATTACTTAGAACGCTTCATTTCGAGGAATACATTATCGGATTTGGAAGGGCGAAGCACATGTGATAAAGTTTGATTGGTTGTAGTTTGTTGTTTCACACTTTCCTCCAAGATGAGAACAGAGAATTTCATGCTCAATGAATGTCTGGTAAACCTACGCAAGACACTTTGCACTGTGAAATTAAATCACATCATTTTTAATGTTCTGATTTGTTGCACAAATGATAGTGAGAGATCGGTCCAATAATTTAAGCAGAGATACTATAGTGAGAATGGAGTTTCGCATTCTTTATGGACTTGACTGGCAAATGCTACCCGTGACTCCTTTTGACTTTGTAAACTTTTATTATTGTCTCTGTGTTTGTTTACAGACACAGATGCATCAATGAAATCGTACTCGAGTCTCAGGGAGGAGGGGGAGATCTACTGTGTCAGACATCTTGTAGAGCTCTGTCATAAGAGGGACATTAAGACAATAAGTGATAATGGAAAGGAAGGAGCAGAAGCACCAGAGAGGAAGTTGATGAGTTTTAAGCTGCAGTGGCCGCAAATGAAAGTTCATCCTGAAGAGTTACTTTGTAAAACAAACTGGTGTTAGTGCACCATCGTGTAGTTATAGCCTTGTAGCCTACAAAAGGTAGATTAGACGCAGCATATCTATGTTTTTTTTTATAGACCACAAACACGAGAGTTAGGTAGAATTATTATGGGACAACAAACCTAAACACAGGCACACAACTATTTGTATATGATTAAACACTAGTTTATTTTAATGCATCTTTTAAAACATTTAATTAATTTTGAATATTTATTTCTACCGGGCAATGCACAAGGCACAAGGACTAATTCTATCAATTTTTATAAGTATAAGG

Coding sequences of Glyma13g10851

Limit To All Plant Sequences

>Glyma13g10851.1   sequence type=CDS   gene model=Glyma13g10851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTCTTTTGTTCTATATGTGACGTCCAAGTTATTAATGCCTATATTCCCTATCGGGCAATGAATTACTTAGAACGCTTCATTTCGAGGAATACATTATCGGAGGGGGAGATCTACTGTGTCAGACATCTTGTAGAGCTCTGTCATAAGAGGGACATTAAGACAATAAGTGATAATGGAAAGGAAGGAGCAGAAGCACCAGAGAGGAAGTTGATGAGTTTTAAGCTGCAGTGGCCGCAAATGAAAGTTCATCCTGAAGAGTTACTTTGTAAAACAAACTGGTGTTAG

>Glyma13g10851.2   sequence type=CDS   gene model=Glyma13g10851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACAGAGAATTTCATGCTCAATGAATGTCTGGAGGGGGAGATCTACTGTGTCAGACATCTTGTAGAGCTCTGTCATAAGAGGGACATTAAGACAATAAGTGATAATGGAAAGGAAGGAGCAGAAGCACCAGAGAGGAAGTTGATGAGTTTTAAGCTGCAGTGGCCGCAAATGAAAGTTCATCCTGAAGAGTTACTTTGTAAAACAAACTGGTGTTAG

>Glyma13g10851.3   sequence type=CDS   gene model=Glyma13g10851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCGTACTCGAGTCTCAGGGAGGAGGGGGAGATCTACTGTGTCAGACATCTTGTAGAGCTCTGTCATAAGAGGGACATTAAGACAATAAGTGATAATGGAAAGGAAGGAGCAGAAGCACCAGAGAGGAAGTTGATGAGTTTTAAGCTGCAGTGGCCGCAAATGAAAGTTCATCCTGAAGAGTTACTTTGTAAAACAAACTGGTGTTAG

Predicted protein sequences of Glyma13g10851

Limit To All Plant Sequences

>Glyma13g10851.1   sequence type=predicted peptide   gene model=Glyma13g10851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLFCSICDVQVINAYIPYRAMNYLERFISRNTLSEGEIYCVRHLVELCHKRDIKTISDNGKEGAEAPERKLMSFKLQWPQMKVHPEELLCKTNWC*

>Glyma13g10851.2   sequence type=predicted peptide   gene model=Glyma13g10851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTENFMLNECLEGEIYCVRHLVELCHKRDIKTISDNGKEGAEAPERKLMSFKLQWPQMKVHPEELLCKTNWC*

>Glyma13g10851.3   sequence type=predicted peptide   gene model=Glyma13g10851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSYSSLREEGEIYCVRHLVELCHKRDIKTISDNGKEGAEAPERKLMSFKLQWPQMKVHPEELLCKTNWC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain