Glyma13g10791 - SoyBase

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Report for Sequence Feature Glyma13g10791

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12944680
stop:	12948456
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10791

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12750	AT	Annotation by Michelle Graham. TAIR10: zinc transporter 1 precursor \| chr3:4051950-4053156 REVERSE LENGTH=355	SoyBase	E_val: 5.00E-129	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0006829	GO-bp	Annotation by Michelle Graham. GO Biological Process: zinc ion transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0071577	GO-bp	Annotation by Michelle Graham. GO Biological Process: zinc ion transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0046873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1558	KOG	Fe2+/Zn2+ regulated transporter	JGI		ISS
PTHR11040	Panther	ZINC-IRON TRANSPORTER	JGI		ISS
PTHR11040:SF1	Panther	ZINC/IRON TRANSPORTER	JGI		ISS
PF02535	PFAM	ZIP Zinc transporter	JGI		ISS
UniRef100_Q6VM19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal transport protein n=1 Tax=Medicago truncatula RepID=Q6VM19_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B66D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B66D related cluster n=1 Tax=unknown RepID=UPI000233B66D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g10791

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g10791 not represented in the dataset	Glyma13g10791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10791 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g004400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10791

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g10791

Limit To All Plant Sequences

>Glyma13g10791.1   sequence type=CDS   gene model=Glyma13g10791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGATTTCATAGTAAAAGAAAACTCTTGATCTTCCTGGTGGTAATCCCAAGCCTAGTCGCTGCCGAGTGCACGTGCGATGAAGAAGACCAAGAGCGAGACAAATCAAAAGCTTTAAGGTACAAAATAGCAGCTTTAATATCAATACTAGTTGCTAGTGCAATCGGGGTGTGTATTCCACTTCTTGGCAAAGTTATACCCGCCTTGAGCCCTGAGAAGAACATATTCTTCATCATTAAGGCCTTTGCCGCAGGTGTGATATTGGCGACCGGTTTTATTCATATCCTACCCGATGCTTTCGAGAACCTTACTTCGCCGTGTTTGAATAAGTATCCATGGGATGCTTTCCCCTTCACTGGCTTTGTGGCAATGTGCACTGCCATGGGGACTCTCATGGTTGAGACTTACGCCACGGCTTATTTTAAAAAACATCATCACTCACAAGTCCAGACAACATACGTGGAAAAGGAGGAATCAGGGGATGTGCATCTTCACACACATGCAACACATGGTCATGCACACGGCCATCTTCCCTCTCATGATCATCAATCATCGGCACTTCTTCGTCATAGGGTCATATCACAGGTGTTGGAGCTAGGAATTATTGTTCATTCTATCATCATTGGAATTTCTATGGGAGCTTCAGAAAGTCCTAAAACAATAAGGCCACTGGTAGCTGCATTGACTTTTCATCAATTTTTTGAAGGCATGGGACTTGGAAGTTGTATAATTCAGGCAAATTTCCAGAGGTTATCTATTACAATAATGGGATTGTTCTTCGCATTAACTACTCCAGTGGGGATTGGAATTGGCATAGGGATAACTAATGTTTACGATGAAAACAGTCCAACTGCCCTAATTGTGGAAGGAATCTTCAATGCAGCATCAGCTGGAATCTTAATTTATATGGCACTTGTAGATCTTCTTGCAGCTGATTTTATGAATCCAAGAATGCAAAAAAGTGGTAGCCTCCGATTAGGAGCCAATCTCTCTCTTCTACTTGGAGCTGGATGTATGTCTCTTCTGGCTAAATGGGCTTAA

Predicted protein sequences of Glyma13g10791

Limit To All Plant Sequences

>Glyma13g10791.1   sequence type=predicted peptide   gene model=Glyma13g10791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRFHSKRKLLIFLVVIPSLVAAECTCDEEDQERDKSKALRYKIAALISILVASAIGVCIPLLGKVIPALSPEKNIFFIIKAFAAGVILATGFIHILPDAFENLTSPCLNKYPWDAFPFTGFVAMCTAMGTLMVETYATAYFKKHHHSQVQTTYVEKEESGDVHLHTHATHGHAHGHLPSHDHQSSALLRHRVISQVLELGIIVHSIIIGISMGASESPKTIRPLVAALTFHQFFEGMGLGSCIIQANFQRLSITIMGLFFALTTPVGIGIGIGITNVYDENSPTALIVEGIFNAASAGILIYMALVDLLAADFMNPRMQKSGSLRLGANLSLLLGAGCMSLLAKWA*

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