SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14965 | AT | Annotation by Michelle Graham. TAIR10: membrane-associated progesterone binding protein 4 | chr4:8551356-8553368 FORWARD LENGTH=245 | SoyBase | E_val: 1.00E-128 | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0048523 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG1108 | KOG | Predicted heme/steroid binding protein | JGI | ISS | |
| PTHR10281 | Panther | MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED | JGI | ISS | |
| PTHR10281:SF4 | Panther | MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED | JGI | ISS | |
| PF00173 | PFAM | Cytochrome b5-like Heme/Steroid binding domain | JGI | ISS | |
| UniRef100_B6UIE2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fiber protein Fb38 n=1 Tax=Zea mays RepID=B6UIE2_MAIZE | SoyBase | E_val: 3.00E-111 | ISS |
| UniRef100_I1LXK9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXK9_SOYBN | SoyBase | E_val: 2.00E-175 | ISS |
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Glyma13g10750 not represented in the dataset |
Glyma13g10750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g004000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g10750.1 sequence type=CDS gene model=Glyma13g10750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTTGAAAACGTTAACAACCTCTCCTCTTTCGGGAATCACTGTTTTGGTCCTTCTCCTCGCTCTCCTTCTCAGATTTTACATCAAATTCGACACCGCTGAGAGGTTGTTCAGTGCTGAAGAGCTATCATTGCTCAATGGAACTGATGAAGGGTTGCCAATCCTTCTAGGAATTCTTGGATCCGTGTTTGATGTAACCAAGGGAAAATCTCATTATGGTTCAGGAGGGGGATACAATCATTTTGCTGGCAGGGATGCTTCTCGCGCATTTGTCTCTGGAAATTTCTCAGGAGATGGTCTCACTGACTCATTGCGTGGTTTATCTAGCACTGAGGTGAAGAGTATTGTTGAATGGAGGGATTTCTACCATAAATCATATAAGTATGTTGGCAAGCTAGTTGGCCGATACTATGATAGCCAAGGGAATCCTACAAAATATTTAAAAGGAGTTGAAGCGAAGGCTGCCAGAGGTGCACAGCTTCTAGAAAAGCAGAAGATTGAAGAGGCGAAACTACCTTCGTGCAATTCGAGATGGAGTCAAGATGAAGGTGGTGAGGTATGGTGTGATGTTGGTTACCCTAGATTGGTTCAGAGGCCACTAGAGATTGCTTTGACAGGGAAGATGAGTAAGCGTTGTGCATGCTTTGAAGATTCTCAGTTGGACCAACCTGGCTTAGAGGTATATGAAGGGTGTGATTACCATGCTACCAGGTGCAAAGTTTAA
>Glyma13g10750.1 sequence type=predicted peptide gene model=Glyma13g10750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLKTLTTSPLSGITVLVLLLALLLRFYIKFDTAERLFSAEELSLLNGTDEGLPILLGILGSVFDVTKGKSHYGSGGGYNHFAGRDASRAFVSGNFSGDGLTDSLRGLSSTEVKSIVEWRDFYHKSYKYVGKLVGRYYDSQGNPTKYLKGVEAKAARGAQLLEKQKIEEAKLPSCNSRWSQDEGGEVWCDVGYPRLVQRPLEIALTGKMSKRCACFEDSQLDQPGLEVYEGCDYHATRCKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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