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Report for Sequence Feature Glyma13g10750

Feature Type:gene_model
Chromosome:Gm13
Start:12835714
stop:12848076
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g10750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14965AT Annotation by Michelle Graham. TAIR10: membrane-associated progesterone binding protein 4 | chr4:8551356-8553368 FORWARD LENGTH=245 SoyBaseE_val: 1.00E-128ISS
GO:0006301GO-bp Annotation by Michelle Graham. GO Biological Process: postreplication repair SoyBaseN/AISS
GO:0048523GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG1108 KOG Predicted heme/steroid binding protein JGI ISS
PTHR10281Panther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED JGI ISS
PTHR10281:SF4Panther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED JGI ISS
PF00173PFAM Cytochrome b5-like Heme/Steroid binding domain JGI ISS
UniRef100_B6UIE2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fiber protein Fb38 n=1 Tax=Zea mays RepID=B6UIE2_MAIZE SoyBaseE_val: 3.00E-111ISS
UniRef100_I1LXK9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXK9_SOYBN SoyBaseE_val: 2.00E-175ISS

Expression Patterns of Glyma13g10750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g004000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g10750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g10750
>Glyma13g10750.1   sequence type=CDS   gene model=Glyma13g10750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTGAAAACGTTAACAACCTCTCCTCTTTCGGGAATCACTGTTTTGGTCCTTCTCCTCGCTCTCCTTCTCAGATTTTACATCAAATTCGACACCGCTGAGAGGTTGTTCAGTGCTGAAGAGCTATCATTGCTCAATGGAACTGATGAAGGGTTGCCAATCCTTCTAGGAATTCTTGGATCCGTGTTTGATGTAACCAAGGGAAAATCTCATTATGGTTCAGGAGGGGGATACAATCATTTTGCTGGCAGGGATGCTTCTCGCGCATTTGTCTCTGGAAATTTCTCAGGAGATGGTCTCACTGACTCATTGCGTGGTTTATCTAGCACTGAGGTGAAGAGTATTGTTGAATGGAGGGATTTCTACCATAAATCATATAAGTATGTTGGCAAGCTAGTTGGCCGATACTATGATAGCCAAGGGAATCCTACAAAATATTTAAAAGGAGTTGAAGCGAAGGCTGCCAGAGGTGCACAGCTTCTAGAAAAGCAGAAGATTGAAGAGGCGAAACTACCTTCGTGCAATTCGAGATGGAGTCAAGATGAAGGTGGTGAGGTATGGTGTGATGTTGGTTACCCTAGATTGGTTCAGAGGCCACTAGAGATTGCTTTGACAGGGAAGATGAGTAAGCGTTGTGCATGCTTTGAAGATTCTCAGTTGGACCAACCTGGCTTAGAGGTATATGAAGGGTGTGATTACCATGCTACCAGGTGCAAAGTTTAA
Predicted protein sequences of Glyma13g10750
>Glyma13g10750.1   sequence type=predicted peptide   gene model=Glyma13g10750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLKTLTTSPLSGITVLVLLLALLLRFYIKFDTAERLFSAEELSLLNGTDEGLPILLGILGSVFDVTKGKSHYGSGGGYNHFAGRDASRAFVSGNFSGDGLTDSLRGLSSTEVKSIVEWRDFYHKSYKYVGKLVGRYYDSQGNPTKYLKGVEAKAARGAQLLEKQKIEEAKLPSCNSRWSQDEGGEVWCDVGYPRLVQRPLEIALTGKMSKRCACFEDSQLDQPGLEVYEGCDYHATRCKV*






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