Glyma13g10730 - SoyBase

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Report for Sequence Feature Glyma13g10730

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12800681
stop:	12809586
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32170	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:13666476-13670924 FORWARD LENGTH=504	SoyBase	E_val: 0	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2798	KOG	Putative trehalase	JGI		ISS
PTHR12303	Panther	UNCHARACTERIZED	JGI		ISS
PF07942	PFAM	N2227-like protein	JGI		ISS
UniRef100_I1NEA0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NEA0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8RWX2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: N2227-like domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q8RWX2_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g10730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g10730

Paralog	Evidence	Comments
Glyma20g16030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g10730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g003900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g10730

Limit To All Plant Sequences

>Glyma13g10730.2   sequence type=transcript   gene model=Glyma13g10730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAGCCGGTTGTTTCTAAACACCAGCGACCCGGGTCGGGTTGAGCATGTTTTTTGTTTTTAGAAAAAAAATCAAAACGACCTCCAAAAAGCTTGAAACGGTGCATTTTTGTGTTTTACACTTCTGCGACTGAGACTGTTGTGCCTTCACATTCGTTCAACTCACAGCAGCAGCGAACCCTAGACGTGAACGGCTGAACCTCGCCGTCGCACGCCGTCTACGGAGGCGGAGGCAAGCTGTCGTGTCTTAACTTGCGCTGTTCGTCGCCGTCGCCGTCACATGCCCTCTAAATAGCTGAATCTAAGGGGTCGAAGTGTTCATAGATTAAGGAGTGATGGAAGAGGCAGAGGAGGATCAGCGTCGTCGTTTGAAGCTTGAAGAGGCCCTTGAAATCCAATCCCTCAGGCGCATCATTAGTGCTTACCTCAATTATCCTGATGCCGCAGAAGAGGATGTTAGAAGAAATGAGAGGTCTTATAGGAAGCTTCCACCTTCCCATAAGGCTTTGTTATCCCAGTATCCTCAAAAGTTTCAAAGATTACGCTGGTGTATCTCAATGAATACTCATTTCATATTCAGCATGCTTCAAGATGCAGATTTTAGTGAAGATCCTCATCCCGAATCTGCCCAAAAAGATCATTTAGTTTCTGAAGGGATTAGTGCTTGTTCATGTGAGTCAGCCCCTGTGAGAATAACATGTTCTGTATCCGATCAACATTGTTGTGTGGAAGGTAGCAATCATACATGCAGATCACAAGCACAAATGCATTCCAATGAGGAGGTGGGCATTGAGAGTCGCCATCAGTCAAATACTGGGAACCATTCTCCAAGGTTGATACATACTAAAGAAACTAGGGAATATTGTGGAAGTCCTATTGCTGATTCCAAGGGCAATGTACCAGACACCTCATCACAGCAACAATGGTTGGCTCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGCAGATAAGGTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCCGAGGGTAAAAAAGAACGTGATCAGTGCTACAATCCTATACTTGAAGAGCTTAATATGCTATTCCCTAATCGCAGTAAAGAGAGTCCACCTGCATGTTTAGTTCCTGGTGCTGGACTTGGTCGGCTTGCCCTGGAGATTTCATGTTTAGGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGCTTTATTCTTAACCATTCCCAAACTGCTGGTGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGATATTCATCCAGCCAGTGCAGGAATTACTGAAGGTTTTTCCATGTGTGGAGGTGACTTTGTTGAAGTTTACAGTGATTCCAGCCAAATTGGTGCTTGGGATGCAGTTGTAACTTGTTTCTTTATCGATACTGCTCATAATATTGTTGAGTACATTGAAATAATTTCAAAAATTTTGAAAGATGGGGGAGTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGATGAAATGTCCATTGAATTGAGTTTGGAAGATGTTAAGAGGGTTGCATTTCATTATGGATTTGAATTTGAGAATGAAAGAACTATTGAGACAACTTACACCGCAAATTCTAGATCAATGATGCAAAATCGTTACTTTGCTGCATTTTGGACAATGAGAAAAAAATCTGCTGCAGTGCAGCAGCAAGTGCCCTGAGAATAGCTGATTCAATTATTGTGATATAAAGTACAAATTAGCTCTCTTTTACTTGGTCATGCCTTGTACTTTTCCTTGTTGGAGTGAGGAACTTTCCTTAATTCATGAAATCCTGACAATTTTTCCAACATTGGGAAGTTAATTTGCTTTTGGTTAACAATTGCATATCATGAATGTTTTTGATAATCATATGCTTGCCAAATAGTATATGCATATCATGAATGTTTTTGATAATCATATGCTTGCCAGATAGTATATGCATTATTGGATACTGTACGAGAAAACTTGAGTGTGGGTTGAAGGTTGAACAGTCCCTTGCTGTGACACAAGCAGGAGCATTATTATGTCAAAGATGCACTTGTGATTTTTATTCTTTTGTAGTTTTCTTTGAATTTCTTAAAACAGAAGGTTTTCATATTGGAAATTCATTTGGCAAGGTTAGAAGCAAAGTTTGATATTTGTGGAAGAAGCCAGGAAGCTGTTACAGTGGAATATGTATTAAGTGGTTATGATTTTTTAAGGAATGAAAGGCAAAATAACAAAGTAAGCTCAATATGCAAGAAGACTATGAGAATCAAATGAGATTTTATC

Coding sequences of Glyma13g10730

Limit To All Plant Sequences

>Glyma13g10730.1   sequence type=CDS   gene model=Glyma13g10730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGCAGAGGAGGATCAGCGTCGTCGTTTGAAGCTTGAAGAGGCCCTTGAAATCCAATCCCTCAGGCGCATCATTAGTGCTTACCTCAATTATCCTGATGCCGCAGAAGAGGATGTTAGAAGAAATGAGAGGTCTTATAGGAAGCTTCCACCTTCCCATAAGGCTTTGTTATCCCAGTATCCTCAAAAGTTTCAAAGATTACGCTGGTGTATCTCAATGAATACTCATTTCATATTCAGCATGCTTCAAGCATTTGAACCTCCACTTGACATGAGCCAGGATGCAGATTTTAGTGAAGATCCTCATCCCGAATCTGCCCAAAAAGATCATTTAGTTTCTGAAGGGATTAGTGCTTGTTCATGTGAGTCAGCCCCTGTGAGAATAACATGTTCTGTATCCGATCAACATTGTTGTGTGGAAGGTAGCAATCATACATGCAGATCACAAGCACAAATGCATTCCAATGAGGAGGTGGGCATTGAGAGTCGCCATCAGTCAAATACTGGGAACCATTCTCCAAGGTTGATACATACTAAAGAAACTAGGGAATATTGTGGAAGTCCTATTGCTGATTCCAAGGGCAATGTACCAGACACCTCATCACAGCAACAATGGTTGGCTCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGCAGATAAGGTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCCGAGGGTAAAAAAGAACGTGATCAGTGCTACAATCCTATACTTGAAGAGCTTAATATGCTATTCCCTAATCGCAGTAAAGAGAGTCCACCTGCATGTTTAGTTCCTGGTGCTGGACTTGGTCGGCTTGCCCTGGAGATTTCATGTTTAGGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGCTTTATTCTTAACCATTCCCAAACTGCTGGTGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGATATTCATCCAGCCAGTGCAGGAATTACTGAAGGTTTTTCCATGTGTGGAGGTGACTTTGTTGAAGTTTACAGTGATTCCAGCCAAATTGGTGCTTGGGATGCAGTTGTAACTTGTTTCTTTATCGATACTGCTCATAATATTGTTGAGTACATTGAAATAATTTCAAAAATTTTGAAAGATGGGGGAGTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGATGAAATGTCCATTGAATTGAGTTTGGAAGATGTTAAGAGGGTTGCATTTCATTATGGATTTGAATTTGAGAATGAAAGAACTATTGAGACAACTTACACCGCAAATTCTAGATCAATGATGCAAAATCGTTACTTTGCTGCATTTTGGACAATGAGAAAAAAATCTGCTGCAGTGCAGCAGCAAGTGCCCTGA

>Glyma13g10730.2   sequence type=CDS   gene model=Glyma13g10730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGCAGAGGAGGATCAGCGTCGTCGTTTGAAGCTTGAAGAGGCCCTTGAAATCCAATCCCTCAGGCGCATCATTAGTGCTTACCTCAATTATCCTGATGCCGCAGAAGAGGATGTTAGAAGAAATGAGAGGTCTTATAGGAAGCTTCCACCTTCCCATAAGGCTTTGTTATCCCAGTATCCTCAAAAGTTTCAAAGATTACGCTGGTGTATCTCAATGAATACTCATTTCATATTCAGCATGCTTCAAGATGCAGATTTTAGTGAAGATCCTCATCCCGAATCTGCCCAAAAAGATCATTTAGTTTCTGAAGGGATTAGTGCTTGTTCATGTGAGTCAGCCCCTGTGAGAATAACATGTTCTGTATCCGATCAACATTGTTGTGTGGAAGGTAGCAATCATACATGCAGATCACAAGCACAAATGCATTCCAATGAGGAGGTGGGCATTGAGAGTCGCCATCAGTCAAATACTGGGAACCATTCTCCAAGGTTGATACATACTAAAGAAACTAGGGAATATTGTGGAAGTCCTATTGCTGATTCCAAGGGCAATGTACCAGACACCTCATCACAGCAACAATGGTTGGCTCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGCAGATAAGGTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCCGAGGGTAAAAAAGAACGTGATCAGTGCTACAATCCTATACTTGAAGAGCTTAATATGCTATTCCCTAATCGCAGTAAAGAGAGTCCACCTGCATGTTTAGTTCCTGGTGCTGGACTTGGTCGGCTTGCCCTGGAGATTTCATGTTTAGGATTTATCAGTCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGCTTTATTCTTAACCATTCCCAAACTGCTGGTGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGATATTCATCCAGCCAGTGCAGGAATTACTGAAGGTTTTTCCATGTGTGGAGGTGACTTTGTTGAAGTTTACAGTGATTCCAGCCAAATTGGTGCTTGGGATGCAGTTGTAACTTGTTTCTTTATCGATACTGCTCATAATATTGTTGAGTACATTGAAATAATTTCAAAAATTTTGAAAGATGGGGGAGTTTGGATAAATTTGGGACCTCTACTTTATCACTTTGCAGATATGTATGGACAGGATGATGAAATGTCCATTGAATTGAGTTTGGAAGATGTTAAGAGGGTTGCATTTCATTATGGATTTGAATTTGAGAATGAAAGAACTATTGAGACAACTTACACCGCAAATTCTAGATCAATGATGCAAAATCGTTACTTTGCTGCATTTTGGACAATGAGAAAAAAATCTGCTGCAGTGCAGCAGCAAGTGCCCTGA

Predicted protein sequences of Glyma13g10730

Limit To All Plant Sequences

>Glyma13g10730.1   sequence type=predicted peptide   gene model=Glyma13g10730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAEEDQRRRLKLEEALEIQSLRRIISAYLNYPDAAEEDVRRNERSYRKLPPSHKALLSQYPQKFQRLRWCISMNTHFIFSMLQAFEPPLDMSQDADFSEDPHPESAQKDHLVSEGISACSCESAPVRITCSVSDQHCCVEGSNHTCRSQAQMHSNEEVGIESRHQSNTGNHSPRLIHTKETREYCGSPIADSKGNVPDTSSQQQWLAPSLKLNVPLVDADKVRCIIRNIVRDWAAEGKKERDQCYNPILEELNMLFPNRSKESPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHSQTAGEWTIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDSSQIGAWDAVVTCFFIDTAHNIVEYIEIISKILKDGGVWINLGPLLYHFADMYGQDDEMSIELSLEDVKRVAFHYGFEFENERTIETTYTANSRSMMQNRYFAAFWTMRKKSAAVQQQVP*

>Glyma13g10730.2   sequence type=predicted peptide   gene model=Glyma13g10730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAEEDQRRRLKLEEALEIQSLRRIISAYLNYPDAAEEDVRRNERSYRKLPPSHKALLSQYPQKFQRLRWCISMNTHFIFSMLQDADFSEDPHPESAQKDHLVSEGISACSCESAPVRITCSVSDQHCCVEGSNHTCRSQAQMHSNEEVGIESRHQSNTGNHSPRLIHTKETREYCGSPIADSKGNVPDTSSQQQWLAPSLKLNVPLVDADKVRCIIRNIVRDWAAEGKKERDQCYNPILEELNMLFPNRSKESPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHSQTAGEWTIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDSSQIGAWDAVVTCFFIDTAHNIVEYIEIISKILKDGGVWINLGPLLYHFADMYGQDDEMSIELSLEDVKRVAFHYGFEFENERTIETTYTANSRSMMQNRYFAAFWTMRKKSAAVQQQVP*

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