Glyma13g10720 - SoyBase

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Report for Sequence Feature Glyma13g10720

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12795052
stop:	12798662
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17980	AT	Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr5:5953596-5956745 FORWARD LENGTH=1049	SoyBase	E_val: 0	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
PTHR10024	Panther	SYNAPTOTAGMIN	JGI		ISS
PTHR10024:SF97	Panther	C2 DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF08372	PFAM	Plant phosphoribosyltransferase C-terminal	JGI		ISS
PF11696	PFAM	Protein of unknown function (DUF3292)	JGI		ISS
UniRef100_Q9FJG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q9FJG3_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B66A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B66A related cluster n=1 Tax=unknown RepID=UPI000233B66A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g10720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g003800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g10720

Limit To All Plant Sequences

>Glyma13g10720.1   sequence type=CDS   gene model=Glyma13g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAGTGTTCGAAAACTGATCGTGGAGGTAGTGGACGCTCACAACCTCGTCCCTAAGGACGGCCACGGAACCTCCAGCCCCTACGTGGTGGTCGACTTCCACGGCCAGCGGAGGAAGACGCGGACCGCGGTCCGTGACTTGAACCCGGTCTGGAAAGAAACGCTGTCGTTTAATGTAGACAATGTTAACTCCCAGTCGTCTCAAATCTTCGGCGACACGCTCGAGCTCGACGTTTACCACGACAAGTCCTACGGCTCCACCCGCAGACACAACTCCCTCGGCCGAATCCGCCTCAGCTCCGCCCAGTTCGTCAACAAAGGCGAGGAGGCTTTGGTGTACTACGTCCTGGAGAAGAAGTACCTTCTCAGCATGATCCAAGGTGAAATCGGTTTGAAAATCTACTACGTCGACGAGGAGAAGGTTCTTAAAATAGAGGAAGCACCGCCGCCCCCACCACCACCGCAGAAGGAAGCAGAGATTACTGAACCGGAGAAAGTGGAAGAAACACCTCCACCACAACCACCAGAAGGTGAGAAACCTAAAGAAGAAGAAATGAAGGAAAAAGAGAAAGAAAACGCTGAACCTCCTCCTCCTCCAGCTCCAGCTGCTGCAACTGAAAAACCACCACCTGAAGCTGAACAGGATTATCAACCGTTGGATCCGTTGTTAGATGTGAAGGCAGCGTCTGTGTCGAGGTCGAATTCGGAAATAAGATTCAACGGAACCAATAACGGTCCTGCACCTCCTCAACCAATGAGAAGGTCTGCATCAACGGCGAGTTTTGCAGCATCAGAGGCGTCGAGTGAAACTAGCAGCATGATGACGATGATGGAACGGTCGTCGTTTGATCTTGTGGAGAAGATGCACTACCTCTTCGTCCACGTCGTCAAAGCCCGCTACTTACCCACCAACGGAAACCCCGTCGTCAAAATCGCCGTTTCGGGGCAGCACCACGTCACGTCCATGCCCGCGCGCAAGTCCACCGTGTTATTCGAATGGAATCAGACCTTCGCATTCGCACGCGACGCACCTGATTCCTCCTCCGTGCTGGAGGTCTCTGCGTGGGACCCCCAAGCTTCCGAGGCTCTGCTCGGTGGTGTGTGCTTTGACGTCAACGAGATTCCCGTGCGGGACCCACCGGACAGCCCTCTGGCCCCACAGTGGTACAGATTGGAAGGCGGAGGGGCCCTCCACGGCGACCTCATGATCGCCACGTGGATGGGAACGCAAGCCGACGAATCATTTCCCGACGCGTGGAAGAGTGACACGTTTGCTCATGTGAACTCCAGAGCCAAAGTTTACCAGTCACCGAAACTGTGGTACCTGAGAGCCACTCTTCTCGAAGCTCAAGACGTTTTTCTTCTGCCATTAACCTCATCCAAGGAATCGTGTTTTCGAGTAAAGGCCAAACTCGGATTCCAGGTGCTGAAATCCAAAACGGTGGTTACTCGTAACGGCACCGTTTCATGGAACAACGAAGACTTCATTTTTGTGGTGGCAGAGCCCGTGAGCGACCACCTCATGTTCACTTTAGAAAACCGACAACCTGACGCGCCGGTGACAATTGGAGTCCTCAGAATACCTTTACTCGCTATTGAGAGAAGGGTCGATGACCGGAGCGTGGCGTCGCGGTGGTTCACCTTCGATAACGAGAGCGACGACAAAGCAAGCAGCAGGCCCAGGGTGCACCTGCGGTTATGCTTCGACGGCGGGTATCACGTGATGGACGAGGCGGCTCACGTTTGCAGCGACTACCGCCCCACGGCAAGGCAGCTCTGGAAGCCACCGGTTGGCACGGTCGAGCTCGGCATCATTGGCTGCAAGAACCTGCTACCGATGAAGACGGTGAACGGTAAGAGCTCCATGGACGCGTACTGCGTGGCCAAGTACGGTAGCAAGTGGGTTCGCACGAGAACCGTTTCGGATAACATGGAACCCAAGTGGAATGAACAGTACACGTGGAAGGTTTACGATCCTTCCACCGTTCTCACCATCGGAGTATTCGACAGCTCCCTCCTCGACATGGATAATGACAAAAATACCCTCATAGGAAAAGTACGCGTGCGTATCTCCACGCTGCATACAGGGAGAGTGTATAAAAACACTTACCCGTTGTTGGTGCTGAGTCCGGTTTCGGGGCTGAAGAAAATGGGGGAGATTGAGATAGCGATAAGGTTCGTTCGGACGACTCAACGGCTAGATTTCCTCCACGTGTACTCGCAGCCGATGCTGCCGTTGATGCACCATGTCAAGCCGCTGGGGGTGGTGCAGCAGGAGGCGCTGCGGAACACCACGGTGAGGATGGTGGCGGGACACCTGTCCAGGGCAGAACCGCCGCTGAGGAAGGAGGTGGTGTTCTACATGCTGGACGCGGACTCACACAACTTCAGCATGAGGAAAGTGCGCGCCAACTGGTATAGGATCATAAACGTCATCGCGGCCGTGGTAGATATTGTACGGTGGATAGAGCACACGCGGGGATGGAGGAATCCAACCGCAACCATATTGGTGCACGCGCTGTTAGTGATGTTGGTGTGGTTCCCTGATTTAATCATTCCCACGTTCTGTTTCTACGTTTTTGCTGTAGGTGCGTGGAACTACAGGTTTAGGGCGCGTGACCCACTTCCGCATTTCGACCCCAAGATATCTTTGGCAGAGGTTGTGGATAGGGAGGAGCTTGATGAGGAGTTTGACACTGTGCCCAGTAACAAAGCGAGTGAGGTGGTGCGAGTGCGGTATGACAGGTTGAGGGCGCTGGGGGCGCGCGTGCAGACGGTGCTGGGGGATTTGGCGACGCAAGGGGAGCGCGTCCAGGCGCTGGTGACGTGGCGGGACCCACGCGCCACGGGAATATTTGTGTTCTTGTGCTTGACTGTGGCGTTCATGCTGTATCTTGTGCCTTCAAAGATGGTGGCGATGGCTTTCGGGTTTTACTATCTCAGGCACCCTATCTTCCGTGATCGCCTGCCCTCGCCGGCGCTGAACTTCTTCAGAAGGTTGCCTTCATTGTCTGATCGAATCATGTAG

Predicted protein sequences of Glyma13g10720

Limit To All Plant Sequences

>Glyma13g10720.1   sequence type=predicted peptide   gene model=Glyma13g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVRKLIVEVVDAHNLVPKDGHGTSSPYVVVDFHGQRRKTRTAVRDLNPVWKETLSFNVDNVNSQSSQIFGDTLELDVYHDKSYGSTRRHNSLGRIRLSSAQFVNKGEEALVYYVLEKKYLLSMIQGEIGLKIYYVDEEKVLKIEEAPPPPPPPQKEAEITEPEKVEETPPPQPPEGEKPKEEEMKEKEKENAEPPPPPAPAAATEKPPPEAEQDYQPLDPLLDVKAASVSRSNSEIRFNGTNNGPAPPQPMRRSASTASFAASEASSETSSMMTMMERSSFDLVEKMHYLFVHVVKARYLPTNGNPVVKIAVSGQHHVTSMPARKSTVLFEWNQTFAFARDAPDSSSVLEVSAWDPQASEALLGGVCFDVNEIPVRDPPDSPLAPQWYRLEGGGALHGDLMIATWMGTQADESFPDAWKSDTFAHVNSRAKVYQSPKLWYLRATLLEAQDVFLLPLTSSKESCFRVKAKLGFQVLKSKTVVTRNGTVSWNNEDFIFVVAEPVSDHLMFTLENRQPDAPVTIGVLRIPLLAIERRVDDRSVASRWFTFDNESDDKASSRPRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGIIGCKNLLPMKTVNGKSSMDAYCVAKYGSKWVRTRTVSDNMEPKWNEQYTWKVYDPSTVLTIGVFDSSLLDMDNDKNTLIGKVRVRISTLHTGRVYKNTYPLLVLSPVSGLKKMGEIEIAIRFVRTTQRLDFLHVYSQPMLPLMHHVKPLGVVQQEALRNTTVRMVAGHLSRAEPPLRKEVVFYMLDADSHNFSMRKVRANWYRIINVIAAVVDIVRWIEHTRGWRNPTATILVHALLVMLVWFPDLIIPTFCFYVFAVGAWNYRFRARDPLPHFDPKISLAEVVDREELDEEFDTVPSNKASEVVRVRYDRLRALGARVQTVLGDLATQGERVQALVTWRDPRATGIFVFLCLTVAFMLYLVPSKMVAMAFGFYYLRHPIFRDRLPSPALNFFRRLPSLSDRIM*

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