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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17980 | AT | Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:5953596-5956745 FORWARD LENGTH=1049 | SoyBase | E_val: 0 | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| PTHR10024 | Panther | SYNAPTOTAGMIN | JGI | ISS | |
| PTHR10024:SF97 | Panther | C2 DOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| PF08372 | PFAM | Plant phosphoribosyltransferase C-terminal | JGI | ISS | |
| PF11696 | PFAM | Protein of unknown function (DUF3292) | JGI | ISS | |
| UniRef100_Q9FJG3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q9FJG3_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B66A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B66A related cluster n=1 Tax=unknown RepID=UPI000233B66A | SoyBase | E_val: 0 | ISS |
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Glyma13g10720 not represented in the dataset |
Glyma13g10720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g003800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g10720.1 sequence type=CDS gene model=Glyma13g10720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGTGTTCGAAAACTGATCGTGGAGGTAGTGGACGCTCACAACCTCGTCCCTAAGGACGGCCACGGAACCTCCAGCCCCTACGTGGTGGTCGACTTCCACGGCCAGCGGAGGAAGACGCGGACCGCGGTCCGTGACTTGAACCCGGTCTGGAAAGAAACGCTGTCGTTTAATGTAGACAATGTTAACTCCCAGTCGTCTCAAATCTTCGGCGACACGCTCGAGCTCGACGTTTACCACGACAAGTCCTACGGCTCCACCCGCAGACACAACTCCCTCGGCCGAATCCGCCTCAGCTCCGCCCAGTTCGTCAACAAAGGCGAGGAGGCTTTGGTGTACTACGTCCTGGAGAAGAAGTACCTTCTCAGCATGATCCAAGGTGAAATCGGTTTGAAAATCTACTACGTCGACGAGGAGAAGGTTCTTAAAATAGAGGAAGCACCGCCGCCCCCACCACCACCGCAGAAGGAAGCAGAGATTACTGAACCGGAGAAAGTGGAAGAAACACCTCCACCACAACCACCAGAAGGTGAGAAACCTAAAGAAGAAGAAATGAAGGAAAAAGAGAAAGAAAACGCTGAACCTCCTCCTCCTCCAGCTCCAGCTGCTGCAACTGAAAAACCACCACCTGAAGCTGAACAGGATTATCAACCGTTGGATCCGTTGTTAGATGTGAAGGCAGCGTCTGTGTCGAGGTCGAATTCGGAAATAAGATTCAACGGAACCAATAACGGTCCTGCACCTCCTCAACCAATGAGAAGGTCTGCATCAACGGCGAGTTTTGCAGCATCAGAGGCGTCGAGTGAAACTAGCAGCATGATGACGATGATGGAACGGTCGTCGTTTGATCTTGTGGAGAAGATGCACTACCTCTTCGTCCACGTCGTCAAAGCCCGCTACTTACCCACCAACGGAAACCCCGTCGTCAAAATCGCCGTTTCGGGGCAGCACCACGTCACGTCCATGCCCGCGCGCAAGTCCACCGTGTTATTCGAATGGAATCAGACCTTCGCATTCGCACGCGACGCACCTGATTCCTCCTCCGTGCTGGAGGTCTCTGCGTGGGACCCCCAAGCTTCCGAGGCTCTGCTCGGTGGTGTGTGCTTTGACGTCAACGAGATTCCCGTGCGGGACCCACCGGACAGCCCTCTGGCCCCACAGTGGTACAGATTGGAAGGCGGAGGGGCCCTCCACGGCGACCTCATGATCGCCACGTGGATGGGAACGCAAGCCGACGAATCATTTCCCGACGCGTGGAAGAGTGACACGTTTGCTCATGTGAACTCCAGAGCCAAAGTTTACCAGTCACCGAAACTGTGGTACCTGAGAGCCACTCTTCTCGAAGCTCAAGACGTTTTTCTTCTGCCATTAACCTCATCCAAGGAATCGTGTTTTCGAGTAAAGGCCAAACTCGGATTCCAGGTGCTGAAATCCAAAACGGTGGTTACTCGTAACGGCACCGTTTCATGGAACAACGAAGACTTCATTTTTGTGGTGGCAGAGCCCGTGAGCGACCACCTCATGTTCACTTTAGAAAACCGACAACCTGACGCGCCGGTGACAATTGGAGTCCTCAGAATACCTTTACTCGCTATTGAGAGAAGGGTCGATGACCGGAGCGTGGCGTCGCGGTGGTTCACCTTCGATAACGAGAGCGACGACAAAGCAAGCAGCAGGCCCAGGGTGCACCTGCGGTTATGCTTCGACGGCGGGTATCACGTGATGGACGAGGCGGCTCACGTTTGCAGCGACTACCGCCCCACGGCAAGGCAGCTCTGGAAGCCACCGGTTGGCACGGTCGAGCTCGGCATCATTGGCTGCAAGAACCTGCTACCGATGAAGACGGTGAACGGTAAGAGCTCCATGGACGCGTACTGCGTGGCCAAGTACGGTAGCAAGTGGGTTCGCACGAGAACCGTTTCGGATAACATGGAACCCAAGTGGAATGAACAGTACACGTGGAAGGTTTACGATCCTTCCACCGTTCTCACCATCGGAGTATTCGACAGCTCCCTCCTCGACATGGATAATGACAAAAATACCCTCATAGGAAAAGTACGCGTGCGTATCTCCACGCTGCATACAGGGAGAGTGTATAAAAACACTTACCCGTTGTTGGTGCTGAGTCCGGTTTCGGGGCTGAAGAAAATGGGGGAGATTGAGATAGCGATAAGGTTCGTTCGGACGACTCAACGGCTAGATTTCCTCCACGTGTACTCGCAGCCGATGCTGCCGTTGATGCACCATGTCAAGCCGCTGGGGGTGGTGCAGCAGGAGGCGCTGCGGAACACCACGGTGAGGATGGTGGCGGGACACCTGTCCAGGGCAGAACCGCCGCTGAGGAAGGAGGTGGTGTTCTACATGCTGGACGCGGACTCACACAACTTCAGCATGAGGAAAGTGCGCGCCAACTGGTATAGGATCATAAACGTCATCGCGGCCGTGGTAGATATTGTACGGTGGATAGAGCACACGCGGGGATGGAGGAATCCAACCGCAACCATATTGGTGCACGCGCTGTTAGTGATGTTGGTGTGGTTCCCTGATTTAATCATTCCCACGTTCTGTTTCTACGTTTTTGCTGTAGGTGCGTGGAACTACAGGTTTAGGGCGCGTGACCCACTTCCGCATTTCGACCCCAAGATATCTTTGGCAGAGGTTGTGGATAGGGAGGAGCTTGATGAGGAGTTTGACACTGTGCCCAGTAACAAAGCGAGTGAGGTGGTGCGAGTGCGGTATGACAGGTTGAGGGCGCTGGGGGCGCGCGTGCAGACGGTGCTGGGGGATTTGGCGACGCAAGGGGAGCGCGTCCAGGCGCTGGTGACGTGGCGGGACCCACGCGCCACGGGAATATTTGTGTTCTTGTGCTTGACTGTGGCGTTCATGCTGTATCTTGTGCCTTCAAAGATGGTGGCGATGGCTTTCGGGTTTTACTATCTCAGGCACCCTATCTTCCGTGATCGCCTGCCCTCGCCGGCGCTGAACTTCTTCAGAAGGTTGCCTTCATTGTCTGATCGAATCATGTAG
>Glyma13g10720.1 sequence type=predicted peptide gene model=Glyma13g10720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSVRKLIVEVVDAHNLVPKDGHGTSSPYVVVDFHGQRRKTRTAVRDLNPVWKETLSFNVDNVNSQSSQIFGDTLELDVYHDKSYGSTRRHNSLGRIRLSSAQFVNKGEEALVYYVLEKKYLLSMIQGEIGLKIYYVDEEKVLKIEEAPPPPPPPQKEAEITEPEKVEETPPPQPPEGEKPKEEEMKEKEKENAEPPPPPAPAAATEKPPPEAEQDYQPLDPLLDVKAASVSRSNSEIRFNGTNNGPAPPQPMRRSASTASFAASEASSETSSMMTMMERSSFDLVEKMHYLFVHVVKARYLPTNGNPVVKIAVSGQHHVTSMPARKSTVLFEWNQTFAFARDAPDSSSVLEVSAWDPQASEALLGGVCFDVNEIPVRDPPDSPLAPQWYRLEGGGALHGDLMIATWMGTQADESFPDAWKSDTFAHVNSRAKVYQSPKLWYLRATLLEAQDVFLLPLTSSKESCFRVKAKLGFQVLKSKTVVTRNGTVSWNNEDFIFVVAEPVSDHLMFTLENRQPDAPVTIGVLRIPLLAIERRVDDRSVASRWFTFDNESDDKASSRPRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGIIGCKNLLPMKTVNGKSSMDAYCVAKYGSKWVRTRTVSDNMEPKWNEQYTWKVYDPSTVLTIGVFDSSLLDMDNDKNTLIGKVRVRISTLHTGRVYKNTYPLLVLSPVSGLKKMGEIEIAIRFVRTTQRLDFLHVYSQPMLPLMHHVKPLGVVQQEALRNTTVRMVAGHLSRAEPPLRKEVVFYMLDADSHNFSMRKVRANWYRIINVIAAVVDIVRWIEHTRGWRNPTATILVHALLVMLVWFPDLIIPTFCFYVFAVGAWNYRFRARDPLPHFDPKISLAEVVDREELDEEFDTVPSNKASEVVRVRYDRLRALGARVQTVLGDLATQGERVQALVTWRDPRATGIFVFLCLTVAFMLYLVPSKMVAMAFGFYYLRHPIFRDRLPSPALNFFRRLPSLSDRIM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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