Glyma13g10700 - SoyBase

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Report for Sequence Feature Glyma13g10700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12773269
stop:	12782190
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16660	AT	Annotation by Michelle Graham. TAIR10: heat shock protein 70 (Hsp 70) family protein \| chr4:9377225-9381232 FORWARD LENGTH=867	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0104	KOG	Molecular chaperones GRP170/SIL1, HSP70 superfamily	JGI		ISS
PTHR19375	Panther	HEAT SHOCK PROTEIN 70KDA	JGI		ISS
PTHR19375:SF8	Panther	HEAT SHOCK PROTEIN 70	JGI		ISS
PF00012	PFAM	Hsp70 protein	JGI		ISS
UniRef100_B9S3M9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock 70 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9S3M9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LXK6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXK6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g10700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g10700

Paralog	Evidence	Comments
Glyma20g16070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g10700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g003700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g10700

Limit To All Plant Sequences

>Glyma13g10700.1   sequence type=CDS   gene model=Glyma13g10700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAAGGTGGCGCTGATGGCGCTGTTCTCCGTCGCGCTCCTGTTCTCTCCGTCGCAATCCGCGGTCTTCAGCGTAGATCTAGGCTCCGAATCGGTGAAGGTGGCGGTGGTGAACCTCAAGCCCGGCCAATCCCCGATCTCCGTCGCGATCAACGAGATGTCCAAACGCAAATCGCCGGCGCTGGTCTCCTTCCATGACGGCGACCGCCTCCTCGGAGAGGAGGCCGCCGGCCTCGCCGCGCGCTACCCGCAGAAGGTCTATTCCCAAATGCGCGACCTCATCGCCAAACCCTACGCCTCCGCGCAGAGGATTCTCGACTCAATGTACTTGCCATTCGATGCAAAGGAAGATTCACGAGGCGGCGTGAGTTTCCAAAGCGAAAACGACGACGCTGTTTATTCCCCCGAGGAGCTGGTTGCCATGGTGTTAGGTTACACGGTGAATTTGGCAGAGTTTCACGCAAAGATTCAGATAAAGGACGCGGTGATCGCGGTGCCGCCGTACATGGGGCAGGCGGAGCGGAGAGGGCTGCTTGCCGCGGCGCAGTTAGCGGGGATTAACGTTTTGTCTCTGATAAACGAGCATTCCGGCGCGGCGCTGCAGTACGGGATCGACAAGGACTTCTCCAACGAGTCTCGGCACGTGATCTTCTACGACATGGGCGCGAGCAGCACCCACGCGGCGCTCGTTTACTTCTCGGCGTACAAGGGGAAGGAGTACGGGAAGAGCGTGTCGGTGAATCAGTTTCAGGTGAAGGACGTGCGCTGGGATCCGGAGCTCGGTGGCCAGCACATGGAGCTGCGGTTGGTGGAGTATTTTGCGGATCAGTTCAATGCGCAGGTTGGAGGTGGAATCGATGTCAGGAAGTTCCCCAAGGCTATGGCTAAGTTGAAGAAACAGGTTAAAAGGACTAAAGAGATACTTAGTGCTAACACAGCAGCTCCTATTTCAGTTGAATCGCTTCATGATGACGTCGACTTCAGGAGCACAATAACCCGTGAGAAATTTGAAGAGCTTTGTGAAGACATTTGGGAAAAATCGCTCTTACCTGTGAAAGAGGTGCTTGAGAATTCTGGCCTGTCATTGGAACAAATATATGCAGTGGAGTTGATTGGAGGTGCCACCAGAGTGCCAAAATTACAGGCTAAGCTTCAAGAATTCCTCAGGAGAAAAGAACTTGATAGGCATCTTGATGCTGATGAAGCAATAGTTCTTGGCGCAGCTCTGCATGCTGCAAATTTAAGTGATGGAATCAAATTGAACCGCAAACTAGGAATGATTGATGGTTCCTTATATGGATTTGTGGTTGAGTTGAATGGTCCTGATCTTTTAAAAGATGAAAGCTCTAGGCAGCTACTTGTGCCACGAATGAAGAAGGTCCCGAGTAAGATGTTTAGATCCATTAATCATAACAAGGATTTTGAAGTTTCACTTGCTTATGAAAGTGAGAATCATTTGCCTCCTGGTGTTACCTCTCCTGAAATTGCTCGATACCAGATATCTGGTTTGACAGATGCAAGTGAGAAATACTCATCTCGGAATCTGTCATCCCCCATCAAGACAAACATACATTTTTCTCTTAGTAGAAGTGGAATTCTTTCACTGGATCGGGCTGATGCTGTTATTGAAATAACAGAGTGGGTGGAAGTTCCTAGAAAGAATTTGACCATAGAGAATTCAACCGTTTCATCAAATGTTTCAGCTGAATCTGCTGCGGGTAATAGTTCTGAAGAAAACAACGAAAGCGTGCAAACTGATAGTGGGATTAATAAGACATCCAACATTAGTTCAGAGGAGCAAGCTGCTGCTGAGCCTGCTACAGAGAAAAAGCTGAAAAAGCGGACCTTTAGGGTACCATTAAAGATTGTAGAGAAGATAACTGGATTTGGAATGTCTCTATCACAAGATTTTCTTGCTGAAGCCAAAAGAAAACTACAAGTACTAGATAAAAAAGATGCAGACAGAAAAAGAACAGCTGAGTTAAAAAATAATTTAGAAGGATATATATATACAACTAAGGAAAAGATTGAAACTCTTGAGGAGTTTGAAAAAGTTTCTACAAGTGAGGAACGCCAGTCCTTCATTGAGAAGCTTGATCAGGTGCAAGATTGGTTGTATACAGATGGTGAAGATGCCAATGCCACAGAGTTTCAAGAGCGTCTAGATCAGTTAAAAGCTGTTGGAGATCCAATTTTCTTCAGGTTAAAAGAGCTTACAGCTCGGCCAGCAGCAGTTGAGCATGCTAATAAATACATTGATGAGTTGAAACAGATTGTTGAGGAGTGGAAAGCAAAGAAGTCTTGGCTTCCACAAGAACGAGTAGACGAGGTCATAAAAAGTTCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAAGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAGGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCCGTAAAAAATGAAACCGAAAGCAGTGAGCAGAATACAGAGAATTCTGATTCTAACTCAGCTGATAGTTCCTCTTCAAGTGATTCATCCGTTAACAGTTCAGAAGGCACAAGCGAAGAGACGGTAACTGAGCAAACTGAAGGTCATGATGAGCTATGA

Predicted protein sequences of Glyma13g10700

Limit To All Plant Sequences

>Glyma13g10700.1   sequence type=predicted peptide   gene model=Glyma13g10700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKVALMALFSVALLFSPSQSAVFSVDLGSESVKVAVVNLKPGQSPISVAINEMSKRKSPALVSFHDGDRLLGEEAAGLAARYPQKVYSQMRDLIAKPYASAQRILDSMYLPFDAKEDSRGGVSFQSENDDAVYSPEELVAMVLGYTVNLAEFHAKIQIKDAVIAVPPYMGQAERRGLLAAAQLAGINVLSLINEHSGAALQYGIDKDFSNESRHVIFYDMGASSTHAALVYFSAYKGKEYGKSVSVNQFQVKDVRWDPELGGQHMELRLVEYFADQFNAQVGGGIDVRKFPKAMAKLKKQVKRTKEILSANTAAPISVESLHDDVDFRSTITREKFEELCEDIWEKSLLPVKEVLENSGLSLEQIYAVELIGGATRVPKLQAKLQEFLRRKELDRHLDADEAIVLGAALHAANLSDGIKLNRKLGMIDGSLYGFVVELNGPDLLKDESSRQLLVPRMKKVPSKMFRSINHNKDFEVSLAYESENHLPPGVTSPEIARYQISGLTDASEKYSSRNLSSPIKTNIHFSLSRSGILSLDRADAVIEITEWVEVPRKNLTIENSTVSSNVSAESAAGNSSEENNESVQTDSGINKTSNISSEEQAAAEPATEKKLKKRTFRVPLKIVEKITGFGMSLSQDFLAEAKRKLQVLDKKDADRKRTAELKNNLEGYIYTTKEKIETLEEFEKVSTSEERQSFIEKLDQVQDWLYTDGEDANATEFQERLDQLKAVGDPIFFRLKELTARPAAVEHANKYIDELKQIVEEWKAKKSWLPQERVDEVIKSSEKLKNWLDEKEAEQTKTSGFSKPAFTSEEVYLKVLDLQTKVASINRIPKPKPKVQKPVKNETESSEQNTENSDSNSADSSSSSDSSVNSSEGTSEETVTEQTEGHDEL*

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