SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34930 | AT | Annotation by Michelle Graham. TAIR10: disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905 | SoyBase | E_val: 9.00E-117 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF473 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_C6ZRZ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat protein n=1 Tax=Glycine max RepID=C6ZRZ4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B261 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B261 related cluster n=1 Tax=unknown RepID=UPI000233B261 | SoyBase | E_val: 0 | ISS |
|
Glyma13g10680 not represented in the dataset |
Glyma13g10680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g003500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g10680.1 sequence type=CDS gene model=Glyma13g10680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTGCTTCACAATATCACAATTTTTTGTTTTGCTACTTTTGCTGTTTGCAATGACGTTACACAAAGGCATCTGTGGAGCAAACACGAAGCTTAGTTGCAATGGAAAAGATCGATCTGCATTGCTACTCTTCAAACACGGTGTCAAAGACGGTTTGCACAAGCTCTCTTCTTGGTCCAATGGAGAAGATTGCTGTGCATGGAAAGGAGTCCAGTGTGATAACATGACAGGCAGAGTCACAAGACTTGATCTAAACCAACAATACTTGGAAGGTGAAATCAACCTATCTTTGCTTCAAATTGAATTTTTGACCTACTTGGACTTGAGCTTGAATGGCTTTACAGGTTTAACTCTTCCACCTATCCTCAACCAATCACTAGTCACACCTTCTAATAACTTGTCTAACCTTGTGTACTTGGACTTATCCTTTAATGAAGATCTTCATTTGGATAATCTTCAATGGCTTTCTCAACTTTCTTCGTTGAAATGTCTCAATCTGAGTGAGATTAATCTTGAAAATGAAACAAACTGGCTTCAAACCATGGCCATGATGCATCCTTCTCTATTAGAGTTGAGATTGGCAAGTTGTCATTTAGTCGATATGAGCCCTTTAGTCAAGTTTGTGAATTTTACTTCACTTGTGACTCTTGACCTGTCTGGGAATTACTTTGACTCTGAGTTGCCTTATTGGCTGTTTAATATTAGCAGTGACATCTCCCATATTGACCTTAGCTTCAACAATTTGCAGGGTCAAGTACCGAAGAGCTTGTTAAATCTTCGAAATCTTAAATCTTTAAGATTGGTTAACAACGAACTTATTGGACCCATTCCAGCTTGGTTAGGGGAACATGAACATCTGCAAACTCTTGCTCTTTCTGAGAACTTGTTCAATGGTTCCTTTCCTTCGAGTCTAGGAAACCTTTCATCCCTAATTGAATTAGCTGTTAGCTCCAATTTCTTGAGTGGTAATGTTACAAGCACCATTGGCCAACTCTTCAACTTGAGGGCTTTATTCATTGGAGGTTCATTGTCTGGTGTTCTATCTGTGAAGCACTTTTCCAAACTCTTCAATTTAGAATCACTTGTCTTGAATTCTGCTTTTTCTTTTGACATAGATCCCCAATGGATTCCTCCTTTTCAACTTCATGAAATTAGCTTGAGAAACACAAATCTAGGTCCTACTTTTCCACAATGGATATACACTCAAAGGACACTAGAAGTTCTAGATACTTCTTACTCAGGACTTTCATCCATAGATGCAGACAAGTTTTGGAGCTTTGTAGCCAAAATTAGAGTAATTAACTTGTCGTTCAACGCAATTAGAGCTGACTTATCAAACGTCACTCTAAATTCTGAAAATGTAATTTTGGCTTGCAACAATTTCACAGGAAGTCTCCCACGTATATCAACAAATGTCTTCTTCTTGAATCTAGCAAACAATTCCTTGTCTGGACCCATTTCCCCTTTTTTGTGCCATAAATTGAGTAGGGAAAATACATTGGGTTACTTGGATGTGTCCTATAATTTTTTCACTGGAGTAATTCCTAATTGTTGGGAAAATTGGAGAGGTTTAACTTTCCTTTACATTGACAACAATAAGCTAGGTGGTGAAATTCCTCCATCAATTGGTTTGTTAGATGAAATCGTAGAGATGGATTTTCACAAGAACAACTTGTCTGGGAAGTTTTCACTTGACTTGTCAAACTTGAAATCGTTGGTGTTCATCAACCTTGGAGAAAATAATTTTTCTGGAGTTGTACCAAAGAAGATGCCAGAGAGTATGCAAGTGATGATATTGAGATCCAATAAATTTAGTGGCAATATTCCAACACAACTATGCAGCCTCCCTTCTCTAATACATCTTGATCTTTCACAAAATAAAATTTCTGGGTCTATTCCTCCATGCGTCTTTACTCTCATGGATGGTGCAAGAAAAGTGAGACATTTTCGGTTCAGTTTCGATTTGTTTTGGAAAGGCCGAGAGTTAGAGTATCAAGACACTGGGTTATTGAGAAATCTCGATCTTTCAACAAACAACCTGTCTGGAGAAATCCCAGTAGAAATTTTTGGCCTCACTCAATTGCAGTTCTTGAACTTGTCCAGAAATCATTTCATGGGAAAAATATCAAGAAAGATTGGTGGCATGAAAAATTTGGAGTCCCTTGATCTCTCCAACAATCACCTTTCAGGGGAAATTCCTGAAACCTTTTCTAATTTATTCTTTCTAAGTTTTCTCAATTTGTCATACAATGATTTCACTGGACAAATCCCACTGGGTACTCAACTTCAGAGTTTTGATGCATGGAGCTATGTTGGGAATCCCAAACTTTGTGGACTTCCTTTACCAAAGAATTGCTCTAAGCAAAATATTCATGACAAGCCAAAGCAAGGTGGAGCAAATGAGTCGCTCTTTCTTGGGATGGGAGTTGGATTTGTTGTTGGCTTATGGGGAGTGTGGGGTTCTTTGTTCCTCAATAAAGCATGGAGACACAAATATTATCGGATCGTGGGTCATGTTGAAGATTGGCTTTATGTGTTTATAGCTCTCAAGTTCAAGAAGTTTGCTGAATTAAGAGCAAGTTCTAGATGA
>Glyma13g10680.1 sequence type=predicted peptide gene model=Glyma13g10680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVCFTISQFFVLLLLLFAMTLHKGICGANTKLSCNGKDRSALLLFKHGVKDGLHKLSSWSNGEDCCAWKGVQCDNMTGRVTRLDLNQQYLEGEINLSLLQIEFLTYLDLSLNGFTGLTLPPILNQSLVTPSNNLSNLVYLDLSFNEDLHLDNLQWLSQLSSLKCLNLSEINLENETNWLQTMAMMHPSLLELRLASCHLVDMSPLVKFVNFTSLVTLDLSGNYFDSELPYWLFNISSDISHIDLSFNNLQGQVPKSLLNLRNLKSLRLVNNELIGPIPAWLGEHEHLQTLALSENLFNGSFPSSLGNLSSLIELAVSSNFLSGNVTSTIGQLFNLRALFIGGSLSGVLSVKHFSKLFNLESLVLNSAFSFDIDPQWIPPFQLHEISLRNTNLGPTFPQWIYTQRTLEVLDTSYSGLSSIDADKFWSFVAKIRVINLSFNAIRADLSNVTLNSENVILACNNFTGSLPRISTNVFFLNLANNSLSGPISPFLCHKLSRENTLGYLDVSYNFFTGVIPNCWENWRGLTFLYIDNNKLGGEIPPSIGLLDEIVEMDFHKNNLSGKFSLDLSNLKSLVFINLGENNFSGVVPKKMPESMQVMILRSNKFSGNIPTQLCSLPSLIHLDLSQNKISGSIPPCVFTLMDGARKVRHFRFSFDLFWKGRELEYQDTGLLRNLDLSTNNLSGEIPVEIFGLTQLQFLNLSRNHFMGKISRKIGGMKNLESLDLSNNHLSGEIPETFSNLFFLSFLNLSYNDFTGQIPLGTQLQSFDAWSYVGNPKLCGLPLPKNCSKQNIHDKPKQGGANESLFLGMGVGFVVGLWGVWGSLFLNKAWRHKYYRIVGHVEDWLYVFIALKFKKFAELRASSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
