Report for Sequence Feature Glyma13g10660
Feature Type: gene_model
Chromosome: Gm13
Start: 12657319
stop: 12665588
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g10660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G22260 AT
Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein | chr3:7871489-7873393 FORWARD LENGTH=240
SoyBase E_val: 4.00E-121 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0008234 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity
SoyBase N/A ISS
PTHR12419 Panther
UNCHARACTERIZED
JGI ISS
PF02338 PFAM
OTU-like cysteine protease
JGI ISS
UniRef100_F4J076 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: OTU-like cysteine protease family protein n=1 Tax=Arabidopsis thaliana RepID=F4J076_ARATH
SoyBase E_val: 2.00E-118 ISS
UniRef100_I3S3E1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3S3E1_LOTJA
SoyBase E_val: 1.00E-137 ISS
Expression Patterns of Glyma13g10660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma13g10660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g003400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g10660
Transcripts of Glyma13g10660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g10660.3 sequence type=transcript gene model=Glyma13g10660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAAGAAATCAAAATAGACCGCTGGAGAGGCCAACACAAGGCTACCGTTTAGTTTGAAGGTTATTGTGATTGGTTGAGTATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGAGCTATGGCTAAGCTTTTGGAGTGAAGTGCACTATAACTCATTGTACACTACCGGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAGACTGATGGCAATCGGCAGATATCTGAATCACGTGAAGAACTGACTTATAATGGGCGAAATGTTTTTTTAACTTATTGTTCTTTTATACTGAGTAAGCCCGTCATTAGTCCCCCTCTCCTTTAGGGATAAACCATAGTTTATGCATAATATTTAAAAATTACCTTGTACAAATCACGTAAGTATAACTAAACTCTGATTTATTATTGTACAGTTCTTATTTTCTACCAAGTGGAGTGTAATATTTATCTCTTTCAACTTAGTTAGGGTTGGTGCGGGGTTTGTTTATCTAGCCCAAGGGGAACTTTAATATCCCCCACCACCACAACGTTGTTGTTTAATTATGTTGTGTTTAAGATTGAGATAATAAGTTTAGAACAGGGAAGAAGAATAACACACAATGTGTATATTATTAATGATGAAAACACAATACAATGATTGGGTTCA
>Glyma13g10660.4 sequence type=transcript gene model=Glyma13g10660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATAAGACTGGTCAAAATGAAATAAGAAGAATCTGAAGAAATCAAAATAGACCGCTGGAGAGGCCAACACAAGGCTACCGTGTAGGTGTTTTCTTTTCCTCCAACTGTTTCCTCCAACACTACACCTACTTTTCTTTACTTCTCTTCTCTCCAACTCAAACATTTATTCTTCCTTCTCCGACAAGTTCTATATCTTCCTTCCTTTCATTCATCTCTCGTTAATCAATCTTTACTCTTCCCTCTTTGGTTTGGTATCAACCGTTTCTTTCGTGTTTTCTCTAGTGCTACGGAACCCAACCAAGTTAGTTTGAAGGTTATTGTGATTGGTTGAGTATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAGACTGATGGCAATCGGCAGATATCTGAATCACGTGAAGAACTGACTTATAATGGGCGAAATGTTTTTTTAACTTATTGTTCTTTTATACTGAGTAAGCCCGTCATTAGTCCCCCTCTCCTTTAGGGATAAACCATAGTTTATGCATAATATTTAAAAATTACCTTGTACAAATCACGTAAGTATAACTAAACTCTGATTTATTATTGTACAGTTCTTATTTTCTACCAAGTGGAGTGTAATATTTATCTCTTTCAACTTAGTTAGGGTTGGTGCGGGGTTTGTTTATCTAGCCCAAGGGGAACTTTAATATCCCCCACCACCACAACGTTGTTGTTTAATTATGTTGTGTTTAAGATTGAGATAATAAGTTTAGAACAGGGAAGAAGAATAACACACAATGTGTATATTATTAATGATGAAAACACAATACAATGATTGGGTTCAGAAA
Coding sequences of Glyma13g10660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g10660.2 sequence type=CDS gene model=Glyma13g10660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGAGCTATGGCTAAGCTTTTGGAGTGAAGTGCACTATAACTCATTGTACACTACCGGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAG
>Glyma13g10660.3 sequence type=CDS gene model=Glyma13g10660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGAGCTATGGCTAAGCTTTTGGAGTGAAGTGCACTATAACTCATTGTACACTACCGGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAG
>Glyma13g10660.4 sequence type=CDS gene model=Glyma13g10660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAG
Predicted protein sequences of Glyma13g10660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g10660.2 sequence type=predicted peptide gene model=Glyma13g10660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTSQLRNGSGSSSSSLNSIFLETEDDQTIASILTEDENLRAENKLGKRLSHLDSIPHTPRVNGQIPDVNDATADHERLSERLVTYGLAELQMEGDGNCQFRALADQLFGNPDYHKHVRRQVIKQLKHHKKLYEGYVPMEYKSYLKKMKKSGEWGDHVTLQAAADRFDAKVCLVTSFRDTCYVEILPTDKSPTRELWLSFWSEVHYNSLYTTGDVPSRVPRKKFWLF*
>Glyma13g10660.3 sequence type=predicted peptide gene model=Glyma13g10660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTSQLRNGSGSSSSSLNSIFLETEDDQTIASILTEDENLRAENKLGKRLSHLDSIPHTPRVNGQIPDVNDATADHERLSERLVTYGLAELQMEGDGNCQFRALADQLFGNPDYHKHVRRQVIKQLKHHKKLYEGYVPMEYKSYLKKMKKSGEWGDHVTLQAAADRFDAKVCLVTSFRDTCYVEILPTDKSPTRELWLSFWSEVHYNSLYTTGDVPSRVPRKKFWLF*
>Glyma13g10660.4 sequence type=predicted peptide gene model=Glyma13g10660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTSQLRNGSGSSSSSLNSIFLETEDDQTIASILTEDENLRAENKLGKRLSHLDSIPHTPRVNGQIPDVNDATADHERLSERLVTYGLAELQMEGDGNCQFRALADQLFGNPDYHKHVRRQVIKQLKHHKKLYEGYVPMEYKSYLKKMKKSGEWGDHVTLQAAADRFDAKVCLVTSFRDTCYVEILPTDKSPTRDVPSRVPRKKFWLF*