Glyma13g10660 - SoyBase

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Report for Sequence Feature Glyma13g10660

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12657319
stop:	12665588
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22260	AT	Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein \| chr3:7871489-7873393 FORWARD LENGTH=240	SoyBase	E_val: 4.00E-121	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
PTHR12419	Panther	UNCHARACTERIZED	JGI		ISS
PF02338	PFAM	OTU-like cysteine protease	JGI		ISS
UniRef100_F4J076	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OTU-like cysteine protease family protein n=1 Tax=Arabidopsis thaliana RepID=F4J076_ARATH	SoyBase	E_val: 2.00E-118	ISS
UniRef100_I3S3E1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3S3E1_LOTJA	SoyBase	E_val: 1.00E-137	ISS

Expression Patterns of Glyma13g10660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g10660 not represented in the dataset	Glyma13g10660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g003400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g10660

Limit To All Plant Sequences

>Glyma13g10660.3   sequence type=transcript   gene model=Glyma13g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAAATCAAAATAGACCGCTGGAGAGGCCAACACAAGGCTACCGTTTAGTTTGAAGGTTATTGTGATTGGTTGAGTATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGAGCTATGGCTAAGCTTTTGGAGTGAAGTGCACTATAACTCATTGTACACTACCGGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAGACTGATGGCAATCGGCAGATATCTGAATCACGTGAAGAACTGACTTATAATGGGCGAAATGTTTTTTTAACTTATTGTTCTTTTATACTGAGTAAGCCCGTCATTAGTCCCCCTCTCCTTTAGGGATAAACCATAGTTTATGCATAATATTTAAAAATTACCTTGTACAAATCACGTAAGTATAACTAAACTCTGATTTATTATTGTACAGTTCTTATTTTCTACCAAGTGGAGTGTAATATTTATCTCTTTCAACTTAGTTAGGGTTGGTGCGGGGTTTGTTTATCTAGCCCAAGGGGAACTTTAATATCCCCCACCACCACAACGTTGTTGTTTAATTATGTTGTGTTTAAGATTGAGATAATAAGTTTAGAACAGGGAAGAAGAATAACACACAATGTGTATATTATTAATGATGAAAACACAATACAATGATTGGGTTCA

>Glyma13g10660.4   sequence type=transcript   gene model=Glyma13g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAGACTGGTCAAAATGAAATAAGAAGAATCTGAAGAAATCAAAATAGACCGCTGGAGAGGCCAACACAAGGCTACCGTGTAGGTGTTTTCTTTTCCTCCAACTGTTTCCTCCAACACTACACCTACTTTTCTTTACTTCTCTTCTCTCCAACTCAAACATTTATTCTTCCTTCTCCGACAAGTTCTATATCTTCCTTCCTTTCATTCATCTCTCGTTAATCAATCTTTACTCTTCCCTCTTTGGTTTGGTATCAACCGTTTCTTTCGTGTTTTCTCTAGTGCTACGGAACCCAACCAAGTTAGTTTGAAGGTTATTGTGATTGGTTGAGTATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAGACTGATGGCAATCGGCAGATATCTGAATCACGTGAAGAACTGACTTATAATGGGCGAAATGTTTTTTTAACTTATTGTTCTTTTATACTGAGTAAGCCCGTCATTAGTCCCCCTCTCCTTTAGGGATAAACCATAGTTTATGCATAATATTTAAAAATTACCTTGTACAAATCACGTAAGTATAACTAAACTCTGATTTATTATTGTACAGTTCTTATTTTCTACCAAGTGGAGTGTAATATTTATCTCTTTCAACTTAGTTAGGGTTGGTGCGGGGTTTGTTTATCTAGCCCAAGGGGAACTTTAATATCCCCCACCACCACAACGTTGTTGTTTAATTATGTTGTGTTTAAGATTGAGATAATAAGTTTAGAACAGGGAAGAAGAATAACACACAATGTGTATATTATTAATGATGAAAACACAATACAATGATTGGGTTCAGAAA

Coding sequences of Glyma13g10660

Limit To All Plant Sequences

>Glyma13g10660.2   sequence type=CDS   gene model=Glyma13g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGAGCTATGGCTAAGCTTTTGGAGTGAAGTGCACTATAACTCATTGTACACTACCGGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAG

>Glyma13g10660.3   sequence type=CDS   gene model=Glyma13g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGAGCTATGGCTAAGCTTTTGGAGTGAAGTGCACTATAACTCATTGTACACTACCGGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAG

>Glyma13g10660.4   sequence type=CDS   gene model=Glyma13g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCTCAGCTGAGGAATGGAAGTGGGAGTTCGAGCTCAAGTTTGAACAGCATATTTCTGGAAACAGAGGATGACCAAACAATTGCAAGCATATTAACAGAGGACGAAAATCTCAGGGCAGAGAACAAGCTTGGAAAGAGACTTTCACATTTAGATTCCATTCCGCACACTCCCCGCGTTAATGGACAAATTCCTGATGTAAACGATGCAACAGCAGATCACGAGAGGCTGTCTGAAAGGTTAGTTACATATGGTTTGGCAGAACTACAGATGGAGGGTGATGGGAATTGCCAGTTTCGAGCTTTAGCTGATCAGCTATTTGGCAATCCTGATTATCACAAGCATGTAAGGCGACAGGTTATAAAGCAGCTAAAGCATCACAAAAAATTGTATGAAGGTTATGTACCAATGGAATACAAAAGCTACTTGAAGAAAATGAAAAAATCAGGGGAGTGGGGAGATCATGTTACTCTACAAGCAGCTGCAGACCGTTTTGATGCCAAAGTTTGTTTAGTCACCTCTTTCAGAGACACTTGCTACGTTGAGATTCTTCCAACTGACAAAAGTCCCACCAGAGACGTTCCTTCGAGAGTGCCAAGAAAAAAGTTTTGGCTCTTCTAG

Predicted protein sequences of Glyma13g10660

Limit To All Plant Sequences

>Glyma13g10660.2   sequence type=predicted peptide   gene model=Glyma13g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSQLRNGSGSSSSSLNSIFLETEDDQTIASILTEDENLRAENKLGKRLSHLDSIPHTPRVNGQIPDVNDATADHERLSERLVTYGLAELQMEGDGNCQFRALADQLFGNPDYHKHVRRQVIKQLKHHKKLYEGYVPMEYKSYLKKMKKSGEWGDHVTLQAAADRFDAKVCLVTSFRDTCYVEILPTDKSPTRELWLSFWSEVHYNSLYTTGDVPSRVPRKKFWLF*

>Glyma13g10660.3   sequence type=predicted peptide   gene model=Glyma13g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSQLRNGSGSSSSSLNSIFLETEDDQTIASILTEDENLRAENKLGKRLSHLDSIPHTPRVNGQIPDVNDATADHERLSERLVTYGLAELQMEGDGNCQFRALADQLFGNPDYHKHVRRQVIKQLKHHKKLYEGYVPMEYKSYLKKMKKSGEWGDHVTLQAAADRFDAKVCLVTSFRDTCYVEILPTDKSPTRELWLSFWSEVHYNSLYTTGDVPSRVPRKKFWLF*

>Glyma13g10660.4   sequence type=predicted peptide   gene model=Glyma13g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSQLRNGSGSSSSSLNSIFLETEDDQTIASILTEDENLRAENKLGKRLSHLDSIPHTPRVNGQIPDVNDATADHERLSERLVTYGLAELQMEGDGNCQFRALADQLFGNPDYHKHVRRQVIKQLKHHKKLYEGYVPMEYKSYLKKMKKSGEWGDHVTLQAAADRFDAKVCLVTSFRDTCYVEILPTDKSPTRDVPSRVPRKKFWLF*

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