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Report for Sequence Feature Glyma13g10625

Feature Type:gene_model
Chromosome:Gm13
Start:12549901
stop:12551097
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g10625
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03680AT Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr3:907624-910677 FORWARD LENGTH=1017 SoyBaseE_val: 6.00E-152ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10024Panther SYNAPTOTAGMIN JGI ISS
PTHR10024:SF97Panther C2 DOMAIN-CONTAINING PROTEIN JGI ISS
PF00168PFAM C2 domain JGI ISS
UniRef100_I1MVS7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVS7_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9SS68UniRef Annotation by Michelle Graham. Most informative UniRef hit: C2 and plant phosphoribosyltransferase domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=Q9SS68_ARATH SoyBaseE_val: 3.00E-149ISS

Expression Patterns of Glyma13g10625
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g10625 not represented in the dataset
Glyma13g10625 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10625 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g003100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g10625
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g10625
>Glyma13g10625.1   sequence type=CDS   gene model=Glyma13g10625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGGTGCTGGAAGGAAGCTCATGGTGGAGGTTTGCAACGCGAAGAACCTGATGCCGAAGGATGGTCAAGGAACCGCGAGTGCTTACGCGATCGTTGACTTCGATGGCCAGCGACGGCGAACCAAGACGAAATCGAGAGATCTCAATCCTCAATGGGAGGAGAAACTCGAGTTCATCGTCCACGACAAAGACTCCATGCCTTCCGAAACGCTGGAGGTGAATATCTACAACGACAAAAGGACAGGGAAACGAAGCACTTTTCTCGGCAAAGTCAAGATTTCCGAAAGCACGTTTGTGAAATCCGGTTCCGAAGCGATTGTCTACTATCCGTTAGAGAAGAGGAGCGTGTTCTCTCAGATCAAAGGAGAGCTCGGTCTCAAGGTTTGGTACGTCGAGGACGATCCACCGGAAACAGAAAACGCCGGTGAGGAGAAAGCAGAGTCAGCACCAGCGGCGGAGGAGAAGCCGCCGGAAAAGGAAAAGAAAGAAGATGAGAATAAACCTAAAGAAGAATCAAAAGAAGAAAAACCAAAGGAGGAGGCTACGGCGGAGGCGGCGGCACCGCCACCGCCGGAGGTGGAGAATCCACCTATTGCGCAGACGGAGAAGCCAAAGCCGCCGAAGGAAAAGCACGGCGAAGTGCAGAAGCGTGCGGATCTGAACGTGAGCGATCACGAACTGCGATCTCTGAGAGGCGATCGGAGCTGCAGTGCCTACGACCTCGTTGATCGCATGCCGTTTTTATACGTTCGCGTGGTGAAGGCGAAGAGACCTAAACCAGAAACCGGTTCGACCGTTTACTCGAAGCTTGTGATCGGGACTCACAGCGTGAAGACCAGAAGCGAGAGTGAAGGCAAAGACTGGGATCAGGTTTTCGCCTTCGATAAAGAAGGCCTCAATTCGACGTTGTTCGAGGTTTCCGTTTGGTCAGAGGAGGTCAAAGAAGGGGATGAGAAAAGCGAGAGTTCTCTCGGAACGGTGTCGTTTGATCTGCAGGAGGTTCCTAAAAGAGTTCCTCCGGATAGTCCTTTGGCTCCGCAGTGGTACACTCTCGAATCCGAAACCTCGCCGGGAAATGACGCTGACAAGGCCTTTCAGGAGGCTTGGCAGTCCGATTCTGGCGGGCTGATACCGGAGACAAGAGCTAAAGTACATTTTTGA
Predicted protein sequences of Glyma13g10625
>Glyma13g10625.1   sequence type=predicted peptide   gene model=Glyma13g10625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEGAGRKLMVEVCNAKNLMPKDGQGTASAYAIVDFDGQRRRTKTKSRDLNPQWEEKLEFIVHDKDSMPSETLEVNIYNDKRTGKRSTFLGKVKISESTFVKSGSEAIVYYPLEKRSVFSQIKGELGLKVWYVEDDPPETENAGEEKAESAPAAEEKPPEKEKKEDENKPKEESKEEKPKEEATAEAAAPPPPEVENPPIAQTEKPKPPKEKHGEVQKRADLNVSDHELRSLRGDRSCSAYDLVDRMPFLYVRVVKAKRPKPETGSTVYSKLVIGTHSVKTRSESEGKDWDQVFAFDKEGLNSTLFEVSVWSEEVKEGDEKSESSLGTVSFDLQEVPKRVPPDSPLAPQWYTLESETSPGNDADKAFQEAWQSDSGGLIPETRAKVHF*






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