SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14180 | AT | Annotation by Michelle Graham. TAIR10: Myzus persicae-induced lipase 1 | chr5:4571442-4574413 REVERSE LENGTH=418 | SoyBase | E_val: 1.00E-120 | ISS |
| GO:0002213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to insect | SoyBase | N/A | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0009062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016298 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipase activity | SoyBase | N/A | ISS |
| KOG2624 | KOG | Triglyceride lipase-cholesterol esterase | JGI | ISS | |
| PTHR11005 | Panther | LYSOSOMAL ACID LIPASE-RELATED | JGI | ISS | |
| PF04083 | PFAM | ab-hydrolase associated lipase region | JGI | ISS | |
| UniRef100_I1LXK0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipase (Fragment) n=1 Tax=Glycine max RepID=I1LXK0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B260 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B260 related cluster n=1 Tax=unknown RepID=UPI000233B260 | SoyBase | E_val: 0 | ISS |
|
Glyma13g10610 not represented in the dataset |
Glyma13g10610 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g003000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g10610.2 sequence type=CDS gene model=Glyma13g10610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAACATTTTATGTTGAAACAAGGATCATAATCACATTGCCAATGGCCGACGCACTGATTAGGTTGTTTTCAGTAGTCTTGCTTTGCATTACAGCAGCACAAGGGAAAGAACAGCTTCACTCAAACAGTGAATGGCCAAAATCTTTTTCAGTTATTCGTGATACTGATGGTATCTGCAAAGTGGCAGAGACACAAGGTTACACATGTGAAGAACATAAGGCTACAACAGAGGATGGCTACATCCTGAGTTTGCAGAGGTTGCCCGCGGGACAGTCTGGTAAGAAAGCCCACAAGCCACCGGTGCTATTACAACATGGTCTCTTTTGTGATGCCATAGTATGGGTGGTCAATCCTCCAGATGAATCATTGGGATTTATCTTGGCAGACAATGGATATGATGTGTGGCTTGCCAATGTTCGTGGCACAAAATATAGCCGCGGGCACATATCACTTCATCCTAATGACATGGCTTATTGGGATTGGTCATGGGATGAATTAGCTAGGTATGATCTTCCTGCTTTTGTTCAGTATGTGTACAATCAAACCGGCCAGCGAATGCACTATGCAGGTCATTCCTTGGGAACCTTAATGGTTTTAGCGGATTTGTCTCGAGGGAAACTGTTGGACATGTTGAGATCAGCTGCATTACTTTGCCCAATTGCTCACTTGAATCATGTCACGTCGCCGGTGGCAAGAACTGCTGCTCAATCATTTATAGCTGACCCTCTATACTGGTTAGGCCTCCGTGAATTCATTCCAAACGGGGATGCTGCAAGCAAATTAGTGGGAGGCATCTGCCATATTCTAAACCTGATCAACTGCTCAAACAACCTACTGACACTAATCACAGGTCCAAACTGCTGCCTAAATTCATCTGCATTCAATGCCTATCTTGATCATGGATTACCGCCAACAGCAACCAAGAACTTGATCCATCTATGTCAAATGATTAGAACAGCAAAAATAGCAAAGTATGATTACGGTGACCAAAGACAAAATATGCAACACTATGGACAACGGGTTCCTCCTCTTTATGACATGACCAAAATTTCAAATGAATTTCCTCTTTTCCTCACCTATGGAAGACAAGATGCGCTATCCAATGTAAAGGATGTGCAACTTTTGCTCAATGACCTTAGAGATCATGATGGAAACAAGTTAGTAGTATTGTTTACGGAAGATTATTCTCACTATGATTTTATTATGGGTGTCAATGTTAACCAAATTATCTATGATCCTATGATAGTTTTCTTCGAGGTTAATTGA
>Glyma13g10610.2 sequence type=predicted peptide gene model=Glyma13g10610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLTFYVETRIIITLPMADALIRLFSVVLLCITAAQGKEQLHSNSEWPKSFSVIRDTDGICKVAETQGYTCEEHKATTEDGYILSLQRLPAGQSGKKAHKPPVLLQHGLFCDAIVWVVNPPDESLGFILADNGYDVWLANVRGTKYSRGHISLHPNDMAYWDWSWDELARYDLPAFVQYVYNQTGQRMHYAGHSLGTLMVLADLSRGKLLDMLRSAALLCPIAHLNHVTSPVARTAAQSFIADPLYWLGLREFIPNGDAASKLVGGICHILNLINCSNNLLTLITGPNCCLNSSAFNAYLDHGLPPTATKNLIHLCQMIRTAKIAKYDYGDQRQNMQHYGQRVPPLYDMTKISNEFPLFLTYGRQDALSNVKDVQLLLNDLRDHDGNKLVVLFTEDYSHYDFIMGVNVNQIIYDPMIVFFEVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
