Glyma13g10600 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g10600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12483796
stop:	12486126
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14180	AT	Annotation by Michelle Graham. TAIR10: Myzus persicae-induced lipase 1 \| chr5:4571442-4574413 REVERSE LENGTH=418	SoyBase	E_val: 7.00E-131	ISS
GO:0002213	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to insect	SoyBase	N/A	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipase activity	SoyBase	N/A	ISS
KOG2624	KOG	Triglyceride lipase-cholesterol esterase	JGI		ISS
PTHR11005	Panther	LYSOSOMAL ACID LIPASE-RELATED	JGI		ISS
PF04083	PFAM	ab-hydrolase associated lipase region	JGI		ISS
UniRef100_I1LXJ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Glycine max RepID=I1LXJ9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LXJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Lipase n=1 Tax=Glycine max RepID=I1LXJ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g10600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g10600

Paralog	Evidence	Comments
Glyma20g16130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g10600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g002900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g10600

Limit To All Plant Sequences

>Glyma13g10600.1   sequence type=CDS   gene model=Glyma13g10600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACACTGTAGTTAGCCTGTTTTCAATAGTCCTGCTTTGCATAACAGCAGCTCAAGGGAGGAAAAGACTTCACCTTAACAATGAACGGCTAACATCCTATCCAGTTATTAATGATATTGATGGTATCTGCAAAACAATGGTAGAGACACAAGGTTACACATGTGAAGAACATCAGGTTACAACAGAGGATGGTTACATCCTGAGCCTGCAGAGGATGCCAGAAGGACGGTCCGGAGAGAAAGCTGACAAGCCGCCGGTGCTATTACAACATGGTATCTTTAGTGATGCTTCAACATGGCTGGTAAATTCTCCAGATGAATCATTGGGATTTATCTTAGCAGACAATGGGTATGATGTGTGGCTCGCCAATGTTCGTGGGACACAATACAGCAGCGGGCACACATCACTTATTCCTAATGACACGGCCTATTGGGATTGGTCATGGGATGAATTGGCTAGTTATGATCTTCCTGCTTTTGCCCAATATGTGTACAACTATACTGGTCAGAGAATACACTATGCAGGTCATTCCTTGGGAACTTTAATGGCTTTAGCTGCTTTATCTCAAGGGCAAGTGGTGAACATGTTGAGATCGACTGCATTACTTTGCCCAATTGCTCATATGAATCAGATTCCATCACTACTAACAAAACTTGCTGCAGACACATTTATAGCTAATGACATGTACTGGTTAGGAATCCACGAATTCAATCCGAACGGGGGTGGTGCGGCATCAAAATTTGTGGAAGACATCTGCAATAAACTAAACTTGAACTGCTCAAACCTAATGTCGCTTGTCACAGGTCCAAACTGCTGCCTAAATTCGTCCAGAACAGATATCTCTTCTGAGCCAACAGCAACTAAGAATTTGATCCATCTATCGCAAATGATCAGAACAGGAAAAATAGTAAAGTATGATTATGGTGACCAAGGACAAAATATGCAGCACTATGGACAACCAGTTCCTCCTCTTTATGACATGACGGCAATTCCAAATGAATTCCCTCTTTTTCTCAGCTATGGAGGGCAAGACTTTCTATCTGATGTAAAGGATGTGCAGGTTTTGCTCAATGACCTCAAAGATCATAATGGGAACAAGCTCGTGGTACTGTTCAAGGAAGATTATGCTCACCTTGATTTTGTCAGGGCTGTCAATGCTAAACAAATGATTTATGATCCTATGATATCTTTTTTTAATGTTAATTGA

Predicted protein sequences of Glyma13g10600

Limit To All Plant Sequences

>Glyma13g10600.1   sequence type=predicted peptide   gene model=Glyma13g10600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANTVVSLFSIVLLCITAAQGRKRLHLNNERLTSYPVINDIDGICKTMVETQGYTCEEHQVTTEDGYILSLQRMPEGRSGEKADKPPVLLQHGIFSDASTWLVNSPDESLGFILADNGYDVWLANVRGTQYSSGHTSLIPNDTAYWDWSWDELASYDLPAFAQYVYNYTGQRIHYAGHSLGTLMALAALSQGQVVNMLRSTALLCPIAHMNQIPSLLTKLAADTFIANDMYWLGIHEFNPNGGGAASKFVEDICNKLNLNCSNLMSLVTGPNCCLNSSRTDISSEPTATKNLIHLSQMIRTGKIVKYDYGDQGQNMQHYGQPVPPLYDMTAIPNEFPLFLSYGGQDFLSDVKDVQVLLNDLKDHNGNKLVVLFKEDYAHLDFVRAVNAKQMIYDPMISFFNVN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain