Glyma13g10516 - SoyBase

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Report for Sequence Feature Glyma13g10516

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12396166
stop:	12399869
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10516

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51010	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:18946880-18948048 REVERSE LENGTH=188	SoyBase	E_val: 5.00E-68	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6T3P1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3P1_SOYBN	SoyBase	E_val: 4.00E-124	ISS

Expression Patterns of Glyma13g10516

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g10516 not represented in the dataset	Glyma13g10516 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g10516

Paralog	Evidence	Comments
Glyma20g16200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g10516 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g002400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10516

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g10516

Limit To All Plant Sequences

>Glyma13g10516.2   sequence type=transcript   gene model=Glyma13g10516   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTACCTTCAATGGGTGCTTAGGAGAAACTTCGCCGGTTGGGGTTACCAGCTTAGTCAAAATCCATGAAGGACAATTTTGTCTAATCACTAAATATAAGGGGGTACAGGGAAGTGCAGAAAGTAAAAGCCCAGAACTCAACCTAAATTCCTAATCAGAAATTCAGAACACAAACCCTTGCCTTTCCTCGCGCTCCTGTCCAGCCACCGTCGTGCCCTGGTCGCACTCAAACACCATCGCGGTTTCAGTCGCACATCGTTGGCGACCGTCGTCCTGCCGCCGCCGTTGCGCCTCCGTCACCACTGGTTTGGGCCTTTTGCCTCTCTCGTAAGTGGTTTGTCATCAATTGAGCCTAAACCACTTCTTTTCTGAAGAGAGAATGGGATTTGCAGGAGCCCTAAGAAACATTGTTCGCCCTCTTTCAGTTGCATCATCAAGAGCTTTAACGCCTCGGATCTCCACCAATGCTTCGATGGCACCATTTTGTCCTGCTTTTCCGTCTCCCTGCAAAACTCCTCAATGGCTTCATCCCCTTTGGAATCACTTCCACAGCTTGACAGACACTCGCTTTCCCAAGAGACGACCCTCGGAAAAACCTCGTCGAAAGAGAGCCAGCTTGAGACCCTCTGGGCCTTATGCTTGGGTTCAATATACACCTGGCCAACCCATACTTCCAAATAAGCCTAATGAAGGGAGTGTCAAAAGGAGAAATGAGAAGAAACGCATGAGGCAACGCCGGGCCTTTATATTGGTGCGCTCTCCCTTTACCCTGCTGAAAAGAAGAAAAGGAAGGCTCAGCTGCAAGAGGCTAATCGCAAGAAAAATATTCAGAGGGTAGAACGTAAAATGGCTGCCGTTGCAAGGGAAAGAGAGTGGGCAGAAAGACTGGCTGAGTTGCAGCGACTTGAGGAAGAGAAGAAAAAATCTATGGCTTGAATTTGGTTTTATCGGTTGTGAACTCTCTAAACACTGTTGCTTTATTTTAAAAATGTTCTATGACTTCTGAAACATGGAAGTTTGAAACTCCCCCTTACTTTCTCAATTCCCTCCCATACCTGGTGAGAGTAATGCTAAATGCTGACCCTTTTTTCTTTCATGAAAGAAATAAAAGACCGTCTATCATTAGATCACTCTGCCTAACATGGGAGGGAGATTTGTGTTCACCCCAATTGTGGGTTTGGATCCATCTGATAGAGGTCCAACATTAGAAGGGGAATTGCTAGGGGCACCCAACAACATTGCTGGTGCACCCAACAATTTTTCAAAAACCCCAAAATACCCCTGAACGTTTTTCAAATGAAAAACAATTTTGTTTTGGTGTGATATTTGTCAACTAAGGTACATAGCTTTTGTGTGTATCATTGTTTATGATGAGGGAAGCCCACAGGCCTACAGGTAACTTACGGGTAAGGCTCATATGACGGGGATCAAGGGATTGCTAGGTGTGACATTATAACTGCGGAAGAAAAAAACTTATTTCGTGGAAGCTCACGGAAGATGTCTTTCGCGAGATTCCACGGAAGAAGTCTTCCGCGACATTTCATGGAAGAAGTTTTATTCCGTTGTTGTAACTACAACTGCGGAAGACAGTTTCTTCCGTGGATTAATTTGTTTTATAATTTTTAGTTTTAAGATTATTTTGAATGTTATTTTGGTTAATTTTATTTGTAATTTATGTGAAACATAAAAATATATTTCTTGGTTGAAGTGTTGATTTTTTTGCCTAGGTTGAAGTATTTTTTGGTTAAATGAACTTTGTATGTTATATTTTTGAAATTATGTAATTAAAAGTTGAATTTGGTTGTTAAAATATTGATGTATATGTAAATTAAATATTT

Coding sequences of Glyma13g10516

Limit To All Plant Sequences

>Glyma13g10516.1   sequence type=CDS   gene model=Glyma13g10516   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTTGCAGGAGCCCTAAGAAACATTGTTCGCCCTCTTTCAGTTGCATCATCAAGAGCTTTAACGCCTCGGATCTCCACCAATGCTTCGATGGCACCATTTTGTCCTGCTTTTCCGTCTCCCTGCAAAACTCCTCAATGGCTTCATCCCCTTTGGAATCACTTCCACAGCTTGACAGACACTCGCTTTCCCAAGAGACGACCCTCGGAAAAACCTCGTCGAAAGAGAGCCAGCTTGAGACCCTCTGGGCCTTATGCTTGGGTTCAATATACACCTGGCCAACCCATACTTCCAAATAAGCCTAATGAAGGGAGTGTCAAAAGGAGAAATGAGAAGAAACGCATGAGGCAACGCCGGGCCTTTATATTGGCTGAAAAGAAGAAAAGGAAGGCTCAGCTGCAAGAGGCTAATCGCAAGAAAAATATTCAGAGGGTAGAACGTAAAATGGCTGCCGTTGCAAGGGAAAGAGAGTGGGCAGAAAGACTGGCTGAGTTGCAGCGACTTGAGGAAGAGAAGAAAAAATCTATGGCTTGA

>Glyma13g10516.2   sequence type=CDS   gene model=Glyma13g10516   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTTGCAGGAGCCCTAAGAAACATTGTTCGCCCTCTTTCAGTTGCATCATCAAGAGCTTTAACGCCTCGGATCTCCACCAATGCTTCGATGGCACCATTTTGTCCTGCTTTTCCGTCTCCCTGCAAAACTCCTCAATGGCTTCATCCCCTTTGGAATCACTTCCACAGCTTGACAGACACTCGCTTTCCCAAGAGACGACCCTCGGAAAAACCTCGTCGAAAGAGAGCCAGCTTGAGACCCTCTGGGCCTTATGCTTGGGTTCAATATACACCTGGCCAACCCATACTTCCAAATAAGCCTAATGAAGGGAGTGTCAAAAGGAGAAATGAGAAGAAACGCATGAGGCAACGCCGGGCCTTTATATTGGTGCGCTCTCCCTTTACCCTGCTGAAAAGAAGAAAAGGAAGGCTCAGCTGCAAGAGGCTAATCGCAAGAAAAATATTCAGAGGGTAG

Predicted protein sequences of Glyma13g10516

Limit To All Plant Sequences

>Glyma13g10516.1   sequence type=predicted peptide   gene model=Glyma13g10516   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFAGALRNIVRPLSVASSRALTPRISTNASMAPFCPAFPSPCKTPQWLHPLWNHFHSLTDTRFPKRRPSEKPRRKRASLRPSGPYAWVQYTPGQPILPNKPNEGSVKRRNEKKRMRQRRAFILAEKKKRKAQLQEANRKKNIQRVERKMAAVAREREWAERLAELQRLEEEKKKSMA*

>Glyma13g10516.2   sequence type=predicted peptide   gene model=Glyma13g10516   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFAGALRNIVRPLSVASSRALTPRISTNASMAPFCPAFPSPCKTPQWLHPLWNHFHSLTDTRFPKRRPSEKPRRKRASLRPSGPYAWVQYTPGQPILPNKPNEGSVKRRNEKKRMRQRRAFILVRSPFTLLKRRKGRLSCKRLIARKIFRG*

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