Glyma13g10480 - SoyBase

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Report for Sequence Feature Glyma13g10480

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12333248
stop:	12336801
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41990	AT	Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 8 \| chr5:16795085-16797562 REVERSE LENGTH=563	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG0584	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF39	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7J815	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase WNK8 n=1 Tax=Medicago truncatula RepID=G7J815_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LXJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXJ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g10480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g10480 not represented in the dataset	Glyma13g10480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g002100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g10480

Limit To All Plant Sequences

>Glyma13g10480.1   sequence type=CDS   gene model=Glyma13g10480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCACTTTCCACGTTGTCGAGAAAGATCTAACCTCCAGATACGCGCGGTACGATGAATTGTTGGGGAAAGGAGCCTTCAAGACTGTATACAAAGCGTTTGACGAAGTGGACGGAATCGAAGTTGCTTGGAACATGATCAGCGTTGAGGACGTTGTGCAGACGCCGCAGCAGCTGGAAAAATTGTACTCGGAGATTCACCTGCTCAAGTCCTTGAAACACGACAATGTCATCAAGTTGTATAATTCTTGGGTCGATGATACCACCGGCACCATCAACATGATCACCGAATTGTTCACCTCCGGAAGTTTGAGGCAGTACCGGAATAAGCATAAGAATGTGGATATGAAAGCCATCAAGAACTGGGCGCGTCAGATTCTCCGCGGCTTGTGCTTTCTGCACTGTCACAGTCCTCCTATTGTTCATAGGGACCTGAAATGTGATAACATTTTTGTCAATGGGAATAGTGGACTGGTTAAGATTGGAGATCTTGGATTGGCAATTGTCATGCAGCAGCCAACTGCCCGGAGTGTCATTGGTACACCGGAGTTTATGGCCCCAGAGCTTTATGAGGAGGAATACAATGAACTTGTTGACATATATTCCTTTGGCATGTGCATCTTAGAAATGGTCACCTGCGAGTACCCGTACAGTGAATGTAATAATCCTGCACAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCCAAAGTAAATGATCCTGAAGTGAAGCAATTCATCGAGAAGTGTCTAGTTCCAGCATCTATGAGATTGTCTGCATCTGAACTACTGAAAGACCCATTCCTTGCAACTGAAAACACAAAGGAGATTAATCATGATATACTGGAGCTGCCTAATCCTCACACCAAATTGGTGAATCCACCAACATGTGAGCCTCATCCCATGGAGATAGATTCTAAATCCAGGCGTACTTCACCTGGCTCCTCCATGGGAAGAATTGAAGAAACTTCTCAAGTTTCATTTTTTGATCTTGTGAGGATGACCGAGAATAACAAATTTATGCTAAGAGGGGAGAAAAATGCTGAAAGTACAATTTCACTCACACTGAGAATTGCAAATGCTTGTGGTGGAGCGAGGAATATCCATTTCCCATTCTATATCAATTCTGATACAGCAATTTCCATTGCTGAGGAGATGGTGGAACATCTGGAACTCACAAATGAGGATGTATCTGTCATTGCAGAGCTAATAAATGACATGATTGCTAAGCTTGTCCCCAACTTGAAACCCTTAAGTGAGAAACTCTCATCCGGAACAGATCAATTGTACAGGCCTTCTTCGGAAGTTCAGAATGGTGAACAATTCAACTGCCACTGGCCATTACAATCAAGTGATTATGATATGAAGCCTGTGTTTAAGGATCTAGTTCACTCATGGCCTGTTGACGGGGATGATCTGGAGAAACAAGAATCTGTTATGTCAGATATATCAGTGGAGTGTGGGATTACAGTTGCCTCAGATTCTAAAGTTGTAGAGCCTGACATTTTTATTTTTGATGAATTCTGGGAGGGGTTTGATGCATTCAATTCCACTTCAGATGTCAGGTTTTGTGGGCAAGAGGATGGACACAAGAATCAATCAGAGAACTCATCAGGCTCTTTAATCAATTCATGTTGCTGCCCATTCAAAAACTTTGACATATCAAGTATATGTTCTCTTACTCTAGCTGACAAAGATCCTTCAGAAGGGCTGCGGTTGGAAATTGAAGCAATAGATACATACTTTGAACAACGCTTTCGTGAGCTTGAGATGATGAGGGTGGCAGCCATAGAAAGTTTGAAGAGGAGACATGGCGAGAAACATACCTGTGATGTGATGCATTAG

Predicted protein sequences of Glyma13g10480

Limit To All Plant Sequences

>Glyma13g10480.1   sequence type=predicted peptide   gene model=Glyma13g10480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTFHVVEKDLTSRYARYDELLGKGAFKTVYKAFDEVDGIEVAWNMISVEDVVQTPQQLEKLYSEIHLLKSLKHDNVIKLYNSWVDDTTGTINMITELFTSGSLRQYRNKHKNVDMKAIKNWARQILRGLCFLHCHSPPIVHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMVTCEYPYSECNNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASMRLSASELLKDPFLATENTKEINHDILELPNPHTKLVNPPTCEPHPMEIDSKSRRTSPGSSMGRIEETSQVSFFDLVRMTENNKFMLRGEKNAESTISLTLRIANACGGARNIHFPFYINSDTAISIAEEMVEHLELTNEDVSVIAELINDMIAKLVPNLKPLSEKLSSGTDQLYRPSSEVQNGEQFNCHWPLQSSDYDMKPVFKDLVHSWPVDGDDLEKQESVMSDISVECGITVASDSKVVEPDIFIFDEFWEGFDAFNSTSDVRFCGQEDGHKNQSENSSGSLINSCCCPFKNFDISSICSLTLADKDPSEGLRLEIEAIDTYFEQRFRELEMMRVAAIESLKRRHGEKHTCDVMH*

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