Report for Sequence Feature Glyma13g10470
Feature Type: gene_model
Chromosome: Gm13
Start: 12322210
stop: 12323987
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g10470
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G10050 AT
Annotation by Michelle Graham. TAIR10: L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592
SoyBase E_val: 2.00E-32 ISS
GO:0006094 GO-bp
Annotation by Michelle Graham. GO Biological Process: gluconeogenesis
SoyBase N/A ISS
GO:0006520 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process
SoyBase N/A ISS
GO:0006566 GO-bp
Annotation by Michelle Graham. GO Biological Process: threonine metabolic process
SoyBase N/A ISS
GO:0007010 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009097 GO-bp
Annotation by Michelle Graham. GO Biological Process: isoleucine biosynthetic process
SoyBase N/A ISS
GO:0010498 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004794 GO-mf
Annotation by Michelle Graham. GO Molecular Function: L-threonine ammonia-lyase activity
SoyBase N/A ISS
GO:0030170 GO-mf
Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding
SoyBase N/A ISS
PF00585 PFAM
C-terminal regulatory domain of Threonine dehydratase
JGI ISS
UniRef100_D2DKF2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Threonine deaminase (Fragment) n=1 Tax=Glycine max RepID=D2DKF2_SOYBN
SoyBase E_val: 6.00E-44 ISS
UniRef100_UPI000233B25B UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B25B related cluster n=1 Tax=unknown RepID=UPI000233B25B
SoyBase E_val: 2.00E-59 ISS
Expression Patterns of Glyma13g10470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma13g10470 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma13g10470
Coding sequences of Glyma13g10470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g10470.1 sequence type=CDS gene model=Glyma13g10470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATATATCATGACCAGAGAGTGATTTTGGACCAGGTTGGGGAATTTGCAGATGGTGTAGCTGTTAAAGAGGAGTTGATAGATGGGGTTGTTCTTGTAAGCCGTGATTCAATTTGTTGTTCAGTTGGAGTTTTTATTGGTCCAAATGTAGCTCTTCTATTCGGGAAAGATATTGTAGTGAAAACCAGAGAAGCACACATGAATTTTGATTTGATAAACTTCGGGTTGTTGTGCTGGCAACTGTTATGGCAGAGGAGCCTGGCAGTTTCAAAAAATTTGCGAATTGGACAGATCAACATCACAGAATTCAAATACAAATATAACTTGAATGAGGCGGTTGTCCTTTGCGGTGTTGGGGTTCACATAGTTTCCGAACTAAGAGCAATGCAGGAGAGGATGGAATCTTCTCAGCTCAAAACTTACAATCTCACAGAAAGTGACATGGTGAAAAATCACTTGTGTTACTTG
Predicted protein sequences of Glyma13g10470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g10470.1 sequence type=predicted peptide gene model=Glyma13g10470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
IYHDQRVILDQVGEFADGVAVKEELIDGVVLVSRDSICCSVGVFIGPNVALLFGKDIVVKTREAHMNFDLINFGLLCWQLLWQRSLAVSKNLRIGQINITEFKYKYNLNEAVVLCGVGVHIVSELRAMQERMESSQLKTYNLTESDMVKNHLCYL