Glyma13g10400 - SoyBase

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Report for Sequence Feature Glyma13g10400

Feature Type:	gene_model
Chromosome:	Gm13
Start:	12207698
stop:	12218846
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PTHR10775	Panther	AC-LIKE TRANSPOSASE-RELATED	JGI		ISS
PTHR10775:SF11	Panther	AC-LIKE TRANSPOSASE	JGI		ISS
PF02992	PFAM	Transposase family tnp2	JGI		ISS
PF03108	PFAM	MuDR family transposase	JGI		ISS
PF10551	PFAM	MULE transposase domain	JGI		ISS
UniRef100_I1LXI3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXI3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q53KI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transposon protein, putative, CACTA, En/Spm sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q53KI5_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g10400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma13g10400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g10400

Limit To All Plant Sequences

>Glyma13g10400.1   sequence type=CDS   gene model=Glyma13g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAAAGTCGCATGAGCCCAGAATATGAGGATGGCATCGAACAGTTCTTGCAATTTGCTTCAGAAAGAGGTCGACCGAATGAAGAAGGAAAATATTATTGTCCTTGCATCAACTGTTTGAATGGAAGACGAAAATTACTCGATGACATACGAGACCATCTATTATGTGATGGGATTAAGAAGAATTACACGACATGGATATGGCATGGTGAAGTCACAGACATGCAGAGTGGGTCCCAATCTGAACCGTTTGATGTAGAAATGGGAGATCAGTTAGAGGACATGATTCGTGACCTTGGACAAGAATCTTTCCAGCAAGCACACGCCCCTGTGTATGAAGGATTGCAGAGTGATTCTAAGAAGCCTTTGTATGCAGGGTGCAAGAATTCCTTAACCCTGTTGTCTGTTGTGTTAAGTCTGGTTAATGTGAAGGTCAGGTATGGGTGGAGTGACAAAAGTTTCACCTCACTGCTTGAGGTAGTGCACAATCTGCTTCCAGAGGACAACACGTTGCCTAAAAGTTACTATAAGGCGAAAAAGATATTGTGTCCGATGGGTATGGAGTATCACAAGATTCTTGTTTGCCCCAATGATTGCATACTGTACAGGCATGAATTCCAAGAAATGTCCAAATGCCCTATCTGTGGGACTTCACGGTACAAAGTGAAGGATGAAGAAGAAAGCAGTTCTGATGAAAACTCCAACAAGGGCCCCCCAGCGAAGGTTTTGTGGTATCTTCCAATCATTCCAAGGTTTAAGCATCTTTTTTCCAATGAGAATGACGCAAAAGACCTTACATGGCATGCAAATGGAAGGATTTCTGATGGAATGGTCTGTCATCCGGCTGATTGCTCACAGTGGAAGAAGATTGATGATCTGAGAAAGTTGTGGGACGAGGGGGTTGTAGTGTTTGATGCGTTTCGCAAGGAGACCTTTGAAATGCGTGCAATGCTTTTTTGTACCATTAATGACTTTCCAGCATATGGGAATCTCAGCGGTTATAGTGTTAAGGGTCATCATGCATGCCCCATCTGTGAAGAAAACACAAGTTATATACAACTTAAACATGGGAGAAAAATAGTCTACAGTAGGCATCGCCGCTTTCTAACACCCAATCATCCTTACAGACGACTGAAAAAAGCTTTTAATGGAAGTCAAGAGCATGATATTGCGTCAATACCGTTGACTAGTGAGCAGGTATATCAGCGGGTTCAACACCTAAATACTATATTTGGGAAGACCCAAAAGAAGGATAAAAGTCAGAGTTGCATATGGAAGAAGAGGTCCATTTTCTTTAATCTTCCGTACTGGTGTGATCTTGAAGTTAGACATTGTATTGATGTTATGCATGTGGAGAAAAATGTTTGTGACAGTGTGATTGGGATGCTCCTTAACATTCAAGGCAAGACGAAGGATGGCTTGAATACCCATCAAGATCTAGCTGATATGGATATACGATCACAGTTGCATCCAAGGTCTGATGGGAAGAAAATTTACTTGCCCCCAGCCTGCCATACTTTGTCCAAGAAGGAGAAGATAAGTTTTTGTCGGTGTCTTCGTTGGGTGAAGGTTCCACAAGGATACTCTTCAAATATTAAGAGCCTTGTGCAGTTGAAGGAGCTTAAGCTTTTAGGGTTAAAGTCTCACGATTGTCACGTGCTCATGCAACAATTGTTAGTTGTGGCTATACGAGACATCTTGCCAAACAAAGTCAGGTTAGCGATAACTCGCCTGTGCTTTTTCTTCCATGCTATATGTAGCAAAGTCATTGATCCTGTCAAGTTTGATGAGTGGGAAAATGAGGCCGCAATTATACTGTGCCAGTTGGAGATGTATTTTCCCCCTGCTTTCTTTGACATCATGATTCACTTGATTGTGCATCTGGTCAAAGAAATCAAATGGTGTGGTCCTGTTTATCTACGGTGGATGTACATTGCAGAAGAAGCCATTGAATTTTGTTCAGAATACTTAGAGAAGGCTAAACCTGTTGGCCTTCCTGAGTCTCGGCATAATGACAGAGTGGGTGATGAGAATGCTTCAGAAACATTAAGAAAGCTAGCAGATGGGCCTAAAAGAAATGTTATAACCTGGCAAGGATACGACATAAACAGCAACACCGGTGTGCGCACCAATGATATAGGATTTACGTTGGTAGACCTAAAGAAACTTGGTTACCACAATGACCCTTTCATCATGGCAGAACAAGCTAGACAAGTATTTTACGTGCAAGACCCTTGTGATGAAAGTGTAGTTTACAAAAGCAAAGCTGAAACGAAAGATATTGAGCTGGTAGAGGAGGAACAGGCACGGATTGGTGTTGATTCTTCTAGTGAGACCTCTAATAAATATGAGAATTATAAGGAGGAAGCACGGAATGCAGCACAAAAGCATAAACCAAAGAGGGTGGAGAGTGTCAATGCTGATGCAGAAGCCTTTGGCAATCAAAGTGTGTCATTGGAGAATAAGACAGGAGATTCAACTGTGCTGAAGATGGGAAATTCGGCTAAAGTTGTGATAAAACAAGACATGAAGGGAAGAAGGCATAAATATGGGTTTAACAACAATAAACGTGAGAAGGCAGAGAAGATCATGGGTTCTCCACCTGCCTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCAGACGCATCGGCTTCGCCATCTGTCATGAAGCGGACACGCAAAGCCTCACGTCTACGATCGTTGTCCACTAGACCACCTGGTGGTGAGAGACCAGTGGTCCATGTTGATCCTGCTACCGGGAAGGCCGACGGTCCCCACAGGAAGAAATTAAGAACATATTTGGGGATTGTGGCGCGTGATAAGGTGGACGTCACCTACGAGAACTGGAAGGAGGCGGAATTTGATATCCCAGAGGCTTCTGACAGTAGGACGAAAAGGAAGTTACTTCAGACCGTGGGGGAGAGATGGAGGCAGTTTAAATTAGACCTCACAAGGAAATGGGCCCTTGCAGTCGATCAGGACGGTGTCGAGGACACTGTCTGTGAGAAATACTGCATCAGCAAGGAAAAATGTGTGCAAGAAGGCACAGGCCATCCAGAAGCAGAATACTGCCCCCCCCACGTTTTGTCTCGTGGGGGTTATGACTATTTCGAGCAGAAGCTCCTGGCTGAGAAGACGAAGAAGAAGCTGGATGAAGCTGCACAGTCAAGAAGCGTTGATGGGGTCATCGACCCTCCATCCCCAGTCAGACGCCACGTGAAGTGGAAGATGGCCCGCACGAAGAAAACAGGGGAGATGACGACTGAGGCCGCAAAAGAAATCGCTGAGAAGATTGCCACACAGGGATCCTTCGTCCCCCATGGACGTCAGGATGTTCTCGCCGCTGCTATTGGACGTTCAGAGCACCCTGGACGTGTCCGTGCTACTGGAGTTGGTGTCACCATCAAGCAATACTTTGGATCGGCTCCATGGACCCAGATGCAGTCCCAGCTTCAGTCGCAGATGCAATCTCAGGGACTTGCAGTGCCTCCTGACCCTCTGGTTGGTCCCTCCAATCCTCGAGTGAGCACAAAGGAGAGTTGTGTTGATCCCTCAAGAAACGATCCTGAGACGGGTGACTCTGACAGGTGCGGCTTGTACATAGAAGCAGATCCTGCCCGCCTGGTTGCCATGGGAAGAGTTTATGAGGGATCCACTATTGTTCATAACACTCCTTTGTTGCCTAGCCAAGTAAAGGTGAGTGTGGAGGAGGTTACAGATGCAGATGCTTCAGTTCCTGAACCCACTGATGAGGTAGTTGTGTCTCCGGCAAAACCACCTCCAAAGCCCGATCCGGAGGTCGATGATCTGCTTTATCTGATGACATTGACCATCCCAGAGCTTTTCTTGAGGCCTTATCAGGTTAGATGGGATGCCATCGTGTTTGGGGTCTTTAATCCAGATTTCTCCCTTTACATAAAGCACGAAGACCTCTCCGAAATCGCACACGGTTGTCAATGTCTCAGCATATCAGTCTTACAGTTGTGGATTCTGCATCTCATTGAAACATGTATGCGAGCGGGGAATTCTAATATCTATGGATTCCTCGAGCCACAGTCCATTCAGAGGTCTGGGCAATCGCAATTTGAGTCTGAAAGTTACATAAAGAGTTGGATGCAGAGTTCACAACGCGATGTCTATCTTGGAGCCTACCTAAATGGGCCAGACAACTACCTTAAGGGGATTATTAATAGTGCTTTAAAAGGTCTTGATGATGCTCCACAGCCCAAATCAAAGGCTCATGCTAGGTGGATTGTCGTCAAGATGATGTACCTGTTGCTGGCCATGAGGAAGATGTTGGTTGGTGCTGGTGAGAATGTTGGTGCTGGAGAGCAGAGGGATGTTGATGCTGGTGAGCAGAGAGATGTTGGTGGTGAAGAGAGAGATGTTGCTGATAGTGAGGAGGAAAAGGAAGTTGACAGTGATGAGTGGCTTATAAATTTCTCTTGTATGATGAATGAAGTTGAAGCTGAAGTTGAGACAGATGGTTATCATTCAGAGGAGCTTAATATCCCCATTAGTAGTGATGATGAAGATGAGGATGTTGAAGTTTATCCTCAATATAGTCAAAGTAGTGGAGTTGGTGAACAGAAGTTGGAATTAGGGATGGAGTTTGGTACTCTAGATGAATTTAAATCTGCCTTGAAGGAGTATAGCATATTGATAGGCAGGGAGTTCAAGTGGAAGAAGAATGATAAACAGAGGGCTAGAGCAAAATGCAAGAAGGCATTTTGTGATTGGGAAATCTACTGTGCAAAGAATGAATCAACCCTTAAATATGTTGAAGCTTTGGAACATTTCAAGCAAGAGTTTGGAGTGCACATTGAAGTTACAAAGATGTGGAGAGACATGAAAGAAGCAAAGCCACTAGTGGAAGGGAATGAGAGGAAACAATATGCCAAAGTATTTGATTATGCACATGAATTGTTGAGGAGCATTCCTGGATCAACAGTTAAGATCAACACAGTGCCAAGTCCAGGAGGTCTAGATGGATGTTTCCTAAAGAGTGCATTTGGAGGAAACTTGCTCTCTGTTGTTGGGCTTGATGGCAATAACCACATCTTTGTTATTGCTTATGCTGTTGTGGACATTGAGAACAAAGACAATTGGAAATGGTTTTTAACTTTGTTGCATGAAGATCTTGGGGATTACATACAGAATGGGTGGAATTTCATGTCAAACATGCAAAAGGGACTTATCCCAGCTTTACAGGAAGTCATGCCTGGTGCACCTCATAGATTCTGCCATATTGCCCATTTGAAGACAATCAACTGCCAGGCTTGGGAGTATTTGAATAAATGGCCCAAACAAGCATGGACAAAAGCCCACTTCAGTACAATACCCAAGGTGGACAATATATGCAACAACACTAGAATTCTGCAGTATAGATGCAAGCCTATTATCACAATGCTTGAAGAAATTATAAGTTATATCATGAGAACCATGGCTGCCTGCAAGGTTAAACTTTCTGGAAAGTTTGGACCATTATGTCCAGTGCAGTATAAAAGACTAGAAAAAGAATTTCATTTTGCTAATCAATGGACTCCCATTTGGGATGCCATGCCGACATGCCATTGCAACAATAACTCTCACAAAGGAGGGAAGCCTGAGGACATGTGTCATGAGTGGCTGTCAATAGAAGCTTATAATAAGACATACCAGCATTTTATTGAACCAGTCCAAGGACCACAATATTGGGCCCAGACACAATATACACACCCTGTTCCACCATATAAAAGGGTCCAAAGAGGAAGGCCAAAGAAAAATAGAAAGAGATCTGTAGATGAGGACAATGTCACAGGACATAAGCTAAAGAGGAAATTGGCTGAGTTTACATGTGGAAGGTGTGGCCAAACTAATCATAACATTAGAAGCTGTAAAAATATTGGAGTTCCTGTTAGGCCAAAGAAATATGTTGCACCATCAACTGCAAATGAGGATGACCACCTATTATCTCAAGATGAACAAGCTTTGAATGAGGCTGAAAAAGATCCGGTGGAGATTAATTTATCTCAGCCTCATTTGTCACAAGATAGTGACATGGAGTTGATGGTCCCTGCAACTATTGTTCCACCAATAGCAAGGAATAAGCTAACCATAACAAGAGCCAAACAAAGGAAGATTGCTGATAAAGATGATGCAGTATAA

Predicted protein sequences of Glyma13g10400

Limit To All Plant Sequences

>Glyma13g10400.1   sequence type=predicted peptide   gene model=Glyma13g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNESRMSPEYEDGIEQFLQFASERGRPNEEGKYYCPCINCLNGRRKLLDDIRDHLLCDGIKKNYTTWIWHGEVTDMQSGSQSEPFDVEMGDQLEDMIRDLGQESFQQAHAPVYEGLQSDSKKPLYAGCKNSLTLLSVVLSLVNVKVRYGWSDKSFTSLLEVVHNLLPEDNTLPKSYYKAKKILCPMGMEYHKILVCPNDCILYRHEFQEMSKCPICGTSRYKVKDEEESSSDENSNKGPPAKVLWYLPIIPRFKHLFSNENDAKDLTWHANGRISDGMVCHPADCSQWKKIDDLRKLWDEGVVVFDAFRKETFEMRAMLFCTINDFPAYGNLSGYSVKGHHACPICEENTSYIQLKHGRKIVYSRHRRFLTPNHPYRRLKKAFNGSQEHDIASIPLTSEQVYQRVQHLNTIFGKTQKKDKSQSCIWKKRSIFFNLPYWCDLEVRHCIDVMHVEKNVCDSVIGMLLNIQGKTKDGLNTHQDLADMDIRSQLHPRSDGKKIYLPPACHTLSKKEKISFCRCLRWVKVPQGYSSNIKSLVQLKELKLLGLKSHDCHVLMQQLLVVAIRDILPNKVRLAITRLCFFFHAICSKVIDPVKFDEWENEAAIILCQLEMYFPPAFFDIMIHLIVHLVKEIKWCGPVYLRWMYIAEEAIEFCSEYLEKAKPVGLPESRHNDRVGDENASETLRKLADGPKRNVITWQGYDINSNTGVRTNDIGFTLVDLKKLGYHNDPFIMAEQARQVFYVQDPCDESVVYKSKAETKDIELVEEEQARIGVDSSSETSNKYENYKEEARNAAQKHKPKRVESVNADAEAFGNQSVSLENKTGDSTVLKMGNSAKVVIKQDMKGRRHKYGFNNNKREKAEKIMGSPPASPPPPPPPPPSDASASPSVMKRTRKASRLRSLSTRPPGGERPVVHVDPATGKADGPHRKKLRTYLGIVARDKVDVTYENWKEAEFDIPEASDSRTKRKLLQTVGERWRQFKLDLTRKWALAVDQDGVEDTVCEKYCISKEKCVQEGTGHPEAEYCPPHVLSRGGYDYFEQKLLAEKTKKKLDEAAQSRSVDGVIDPPSPVRRHVKWKMARTKKTGEMTTEAAKEIAEKIATQGSFVPHGRQDVLAAAIGRSEHPGRVRATGVGVTIKQYFGSAPWTQMQSQLQSQMQSQGLAVPPDPLVGPSNPRVSTKESCVDPSRNDPETGDSDRCGLYIEADPARLVAMGRVYEGSTIVHNTPLLPSQVKVSVEEVTDADASVPEPTDEVVVSPAKPPPKPDPEVDDLLYLMTLTIPELFLRPYQVRWDAIVFGVFNPDFSLYIKHEDLSEIAHGCQCLSISVLQLWILHLIETCMRAGNSNIYGFLEPQSIQRSGQSQFESESYIKSWMQSSQRDVYLGAYLNGPDNYLKGIINSALKGLDDAPQPKSKAHARWIVVKMMYLLLAMRKMLVGAGENVGAGEQRDVDAGEQRDVGGEERDVADSEEEKEVDSDEWLINFSCMMNEVEAEVETDGYHSEELNIPISSDDEDEDVEVYPQYSQSSGVGEQKLELGMEFGTLDEFKSALKEYSILIGREFKWKKNDKQRARAKCKKAFCDWEIYCAKNESTLKYVEALEHFKQEFGVHIEVTKMWRDMKEAKPLVEGNERKQYAKVFDYAHELLRSIPGSTVKINTVPSPGGLDGCFLKSAFGGNLLSVVGLDGNNHIFVIAYAVVDIENKDNWKWFLTLLHEDLGDYIQNGWNFMSNMQKGLIPALQEVMPGAPHRFCHIAHLKTINCQAWEYLNKWPKQAWTKAHFSTIPKVDNICNNTRILQYRCKPIITMLEEIISYIMRTMAACKVKLSGKFGPLCPVQYKRLEKEFHFANQWTPIWDAMPTCHCNNNSHKGGKPEDMCHEWLSIEAYNKTYQHFIEPVQGPQYWAQTQYTHPVPPYKRVQRGRPKKNRKRSVDEDNVTGHKLKRKLAEFTCGRCGQTNHNIRSCKNIGVPVRPKKYVAPSTANEDDHLLSQDEQALNEAEKDPVEINLSQPHLSQDSDMELMVPATIVPPIARNKLTITRAKQRKIADKDDAV*

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