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Report for Sequence Feature Glyma13g10360

Feature Type:gene_model
Chromosome:Gm13
Start:12138250
stop:12141557
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g10360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64660AT Annotation by Michelle Graham. TAIR10: methionine gamma-lyase | chr1:24028977-24030537 FORWARD LENGTH=441 SoyBaseE_val: 0ISS
GO:0006520GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process SoyBaseN/AISS
GO:0006730GO-bp Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process SoyBaseN/AISS
GO:0009970GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to sulfate starvation SoyBaseN/AISS
GO:0019458GO-bp Annotation by Michelle Graham. GO Biological Process: methionine catabolic process via 2-oxobutanoate SoyBaseN/AISS
GO:0042631GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation SoyBaseN/AISS
GO:0051289GO-bp Annotation by Michelle Graham. GO Biological Process: protein homotetramerization SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0018826GO-mf Annotation by Michelle Graham. GO Molecular Function: methionine gamma-lyase activity SoyBaseN/AISS
KOG0053 KOG Cystathionine beta-lyases/cystathionine gamma-synthases JGI ISS
PTHR11808Panther CYSTEINE/METHIONINE METABOLISM PYRIDOXAL-5-PHOSPHATE ENZYMES JGI ISS
PTHR11808:SF9Panther gb def: aminotransferase, class v [deinococcus radiodurans] JGI ISS
PF01053PFAM Cys/Met metabolism PLP-dependent enzyme JGI ISS
UniRef100_B9RYU1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cystathionine gamma-synthase, putative n=1 Tax=Ricinus communis RepID=B9RYU1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1LXI0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXI0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g10360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g10360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g001200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g10360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g10360
>Glyma13g10360.1   sequence type=CDS   gene model=Glyma13g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAAGCGCGGTGGTGAACAGGAAGCGCAGCGGCACGGACGACGTCGTTTCGGAGAACGACGGAAAGAGGAAGAATGTGGTGGCACCCGACATGGACCCTGCGGCGGCATTGGCCTTGACGCGGCACGAGTTCGGGGAGCACGGTGGCGTGAACATGTCGATCGAGGCCTCGGCTACGTTCACGGTGATGGAGCCGGAGACCCTCTGCCGCATGTTCACTGGCGAGCTGGGCCCCGACCGCGACTTCTTCATCTACAGCCGCCACTTCAACCCGACGGTGCTCAACTTGGGCCGCCACATGGCCGCCCTGGAAGGCACGGAGGCCGCCTACTGCACCGCCAGCGGCATGGCCGCCATCTCCTCGGTCCTCCTCCAGCTCTGCAGCTCCGGCGGGCACGTGGTGGCCTCCACCACTCTCTACGGCGGGACCCACGCCCTCCTCACGCACTTCCTCCCCGGGAAATGCAACATTAGCACCACCTTCGTGGACATCAGTGATTTGGAAAGCGTGGAGAGTGCGATCGTGGAAGGGAAGACGAACGTCCTGTACTTCGAGTCCATGGCGAATCCGAGCCTGAAGGTCGCAAACATTCCGGAACTGTGCCGCGTGGGACACGCAAAGGGCGTCACAGTTGTCACCGACAACACCTTCGCTCCCATGGTCATCTCCCCCGCTCGTCTCGGCGCTGACGTCGTCGTTCACAGCATCTCCAAGTTTATCAGTGGGGGTGCTGATATTATTGCAGGGGCTGTGTGCGGGCCTGCGAGCCTAGTGAATTCGATGATGGACCTTCACGACGGGTCCCTGATGCTGCTGGGTCCAACAATGAATGCGAAGGTGGCGTTTGAACTGTCAGAAAGAATCCCACACTTGAGCCTTAGGATGAAGGAGCATTGCCACCGTGCGTTGGTGTTCGCCACAAGGCTCAAGAAATTAGGGTTGAAGGTGATCTACCCAGGCCTTGAAGACCACCCACAGCACGAATTGCTGAAATCAATAGCCAACAGGGAATATGGGTATGGTGGACTTCTTTGCATTGACATGGAAACGGTGGAGAGGGCAAACCTGTTGATGGCTCACTTGCAAAACGATGCTCAATTTGGATTCATGGCTGTTAGCTTGGGGTATTATGAGACCCTCATGTCCTGCTCTGGTAGCAGCACTAGCAGTGGGATGACTGAGGAGGAACAGAAGCTTGCCGGAATCTCCCCAGGCCTAGTAAGGATGTCAATTGGATACATTGGCACATTGGAGCAGAAATGGAGTCAGATGGAAATTGCACTCGATAGATTTCAGGAAAAGCAGCCACTAGTTTAA
Predicted protein sequences of Glyma13g10360
>Glyma13g10360.1   sequence type=predicted peptide   gene model=Glyma13g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESAVVNRKRSGTDDVVSENDGKRKNVVAPDMDPAAALALTRHEFGEHGGVNMSIEASATFTVMEPETLCRMFTGELGPDRDFFIYSRHFNPTVLNLGRHMAALEGTEAAYCTASGMAAISSVLLQLCSSGGHVVASTTLYGGTHALLTHFLPGKCNISTTFVDISDLESVESAIVEGKTNVLYFESMANPSLKVANIPELCRVGHAKGVTVVTDNTFAPMVISPARLGADVVVHSISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIPHLSLRMKEHCHRALVFATRLKKLGLKVIYPGLEDHPQHELLKSIANREYGYGGLLCIDMETVERANLLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSGMTEEEQKLAGISPGLVRMSIGYIGTLEQKWSQMEIALDRFQEKQPLV*






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