SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42090 | AT | Annotation by Michelle Graham. TAIR10: Lung seven transmembrane receptor family protein | chr5:16826830-16828149 FORWARD LENGTH=439 | SoyBase | E_val: 0 | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG2569 | KOG | G protein-coupled seven transmembrane receptor | JGI | ISS | |
| PTHR21229 | Panther | LUNG SEVEN TRANSMEMBRANE RECEPTOR | JGI | ISS | |
| PTHR21229:SF2 | Panther | LUNG SEVEN TRANSMEMBRANE RECEPTOR | JGI | ISS | |
| PF06814 | PFAM | Lung seven transmembrane receptor | JGI | ISS | |
| UniRef100_E5RDD0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Seven transmembrane receptor n=1 Tax=Cucumis melo subsp. melo RepID=E5RDD0_CUCME | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LXH8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXH8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma13g10330 not represented in the dataset |
Glyma13g10330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g001000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g10330.1 sequence type=CDS gene model=Glyma13g10330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAAGATGGGGTCCTCACCTTCACGTTGCTCCTTCTTCCTATTCCTCCTCCTCCTAGTGGCGCTCTTCCCCTCGTCGCTCTCCGAGATCCGGTTCTCCGAGATCCGAAACGACGATCGCTCCATCGTTCCCTTCGATCAGTTTGGATTCACCCACAAGGGTCGCCTTGAGCTCAGCGTTTCCAAAATATCACTCTCCAATTCCAATTTGGACCTCTCCAAGGTGGGATTCTTCCTCTGCACCCTGGATTCCTGGCTTCATGTCTTCCAGCAACTGGAGGATGGCGAGATTCGGTGCGCCCTTCAATCCGATCTGGTCAAGTCCGTCTACACCTTCAATTCTCTCAACGGCAAGGACTCTTTCAGCACGCTCTACAAAGAAGAAACCGACGCCGATCAGTACAACCTCGTCTTTGCCAACTGCCACTCGCCGCAACTCAAAGTGACCATGGACGTTAAATCTGCCATGTATAATCTCGACGGAAAGAGCGACGTCCGCGACTACCTCTCTGCCGGCAGAACCATCCTTCCGAGGGTTTATTTCCTCTTCTCGCTTGTGTATTTCACCCTCGCAGCTCTCTGGATCAGCGTCCTCTACAAGAAGCGCTTGACCGCCTTCCGCATCCATTACTTCATGCTAGCCGTGGTTATCTTGAAAGCCCTGAATCTCTTGTGCGAGGCCGAGGACAAATCCTACATCAAGCGCACCGGAAGCGCCCACGGTTGGGATATCATCTTTTACATTTTCAGCTTCCTCAAGGGCATCTCGCTCTTCACTCTCATTGTCTTGATTGGCACTGGCTGGTCCTTCCTCAAACCCTTCCTTCAGGATAAGGAAAAAAAGGTTCTCATCGTTGTCATCCCCCTTCAAGTCATTGCCAACATTGCTCAGGTCGTTATTGACGAGAATGGGCCCTACGGCCATGACTGGGCTACCTGGAAACAGGTCTTCCTCCTTGTTGACGTCGTCTGTTGCTGCGCTGTGCTTTTCCCCATTGTCTGGTCCATCAAGAACCTCCGTGAGGCCGCTAGGACCGACGGCAAGGCCGCTGTTAATTTGATGAAGCTTACTCTCTTCAGGCACTACTATGTCGTCGTTATCTGTTACATTTACTTCACCAGGGTTGTCGTTTATGCCTTGGAGACTATTACCTCCTATCGTTATTCTTGGACCAGTGTGGTTGCTGCTGAGTTGGCCACCCTTGCTTTCTATTTCTTTACTGGCTACAAGTTCAAGCCAGAGGCTCACAATCCGTATTTTGTCATCGATGACGAAGAGGAAGAGGCTGCCGCAGAGGCCTTGAAGCTTGAAGATGAATTTGAATTGTAA
>Glyma13g10330.1 sequence type=predicted peptide gene model=Glyma13g10330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMKMGSSPSRCSFFLFLLLLVALFPSSLSEIRFSEIRNDDRSIVPFDQFGFTHKGRLELSVSKISLSNSNLDLSKVGFFLCTLDSWLHVFQQLEDGEIRCALQSDLVKSVYTFNSLNGKDSFSTLYKEETDADQYNLVFANCHSPQLKVTMDVKSAMYNLDGKSDVRDYLSAGRTILPRVYFLFSLVYFTLAALWISVLYKKRLTAFRIHYFMLAVVILKALNLLCEAEDKSYIKRTGSAHGWDIIFYIFSFLKGISLFTLIVLIGTGWSFLKPFLQDKEKKVLIVVIPLQVIANIAQVVIDENGPYGHDWATWKQVFLLVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRHYYVVVICYIYFTRVVVYALETITSYRYSWTSVVAAELATLAFYFFTGYKFKPEAHNPYFVIDDEEEEAAAEALKLEDEFEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
