Report for Sequence Feature Glyma13g10200
Feature Type: gene_model
Chromosome: Gm13
Start: 11818626
stop: 11823341
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g10200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G13780 AT
Annotation by Michelle Graham. TAIR10: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993366-7998433 REVERSE LENGTH=797
SoyBase E_val: 0 ISS
GO:0006418 GO-bp
Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation
SoyBase N/A ISS
GO:0006431 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionyl-tRNA aminoacylation
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0000049 GO-mf
Annotation by Michelle Graham. GO Molecular Function: tRNA binding
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0004812 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity
SoyBase N/A ISS
GO:0004825 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methionine-tRNA ligase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
KOG1247
KOG
Methionyl-tRNA synthetase
JGI ISS
PTHR11946 Panther
ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES
JGI ISS
PTHR11946:SF20 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF09334 PFAM
tRNA synthetases class I (M)
JGI ISS
UniRef100_I1LXH0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Methionine--tRNA ligase 2 n=1 Tax=Glycine max RepID=I1LXH0_SOYBN
SoyBase E_val: 0 ISS
UniRef100_UPI000233B100 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B100 related cluster n=1 Tax=unknown RepID=UPI000233B100
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g10200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma13g10200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g000200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g10200
Coding sequences of Glyma13g10200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g10200.1 sequence type=CDS gene model=Glyma13g10200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGAGAATGTGAAAGGATCGAAGCTTCCCATGGAAGGAAAGCGTAACATCCTTATCACAAGTGCCTTGCCTTACGTTAATAATGTTCCTCACCTCGGCAATATCATCGGATGTGTGTTAAGTGCTGATGTGTTTGCTCGGTACTGTCGACTTCGGGGTTACAATGCTATTTACATTTGTGGCACTGATGAGTATGGAACAGCCACAGAAACTAAAGCCATGGAAGAAAATTGCTCCCCCAAAGAAATTTGTGACAAATACCATGCTATTCACAAGGAGGTCTACAATTGGTTCAATATAAGTTTTGATGAATTTGGGCGGACGTCATGCCCTCAGCAAACTGAAGTTTGTCATGCAATTTTTAAAAGTATATATGACAAGTGGCTCTCCGAGAACACAATACAGCAGCTTTACTGCGACAGTTGTGAAAGATTCTTAGCTGATAGGCTTGTGGAGGGTACCTGCCCGACTCAGGGGTGCAAATATGATTCTGCTCGAGGAGACCAATGTGAGAAATGTGGAAAGCTTCTAAATCCGACAGAATTGAAAAATCCCAGATGCAAGGTTTGTGAGAAACCTCCTCGTATTCGCGATACAGACCACTTGTTTCTTGAACTCCCCTTATTGAAAGATAGATTGGAAAAATACATCAGTGAGATGTCCGTGGTCGGTGGATGGAGTCAGAATGCTATCCAAACAACAAATTCGTGGCTTAGAGAAGGATTAAGGTCCCGTTGTATTACAAGGGATCTAAAGTGGGGGGTTTCTGTTCCACATGAAAAATACAGCGACAAGGTTTTCTATGTTTGGTTTGATGCTCCTATTGGATATGTCTCAATTACTTCGTGCTACACACGTGATTGGGAGAAATGGTGGAAAAATCCAGAGAATGTGGAGTTGTATCAATTTATGGGCAAGGACAATGTGCCATTCCATACAGTGATGTTTCCATCTACTCTACTTGCAACCGGTGAAAATTGGACTTTAATGAAGACTATTAGCGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAGAGCAAAGGTATCGGGGTATTTGGTAATGATGTGAAAGATACTAGCATTCCAGTTGAAGTATGGAGATATTACTTACTCACAAATAGGCCCGAGGTATCAGATACATTATTTACATGGCCTGACTTGCAAGCTAAATTAAACTGTGAGTTGCTGAATAATTTGGGCAACTTCATTCACCGGGTTTTGAGCTTTATTGCCAAGCCTGCAGGTCGAGGATATGATTCTGTTATTCCCTCTATTCCTGATGATGTAAGTGGCGAATCCCATATTCAGACCAAAATATTTGCTGATAAAGTTGTGGCATATATAGACCAATACATAGAAGCAATGGAGAAGGTTAAACTTAAGCAAGGATTGAAAACTGCAATGAGCATATCCAGCGAAGGAAATGCATATCTGCAGGAAGCTGAATTCTGGCGCCTTTACAAGGAAAATAGACCTCTTTGCTCCCTTGTCATGAAAACTGCAGTTGGGATTGTGTATCTTCTTGCTTGTTTGTTAGAACCTTTTATCCCATCTTTCACTCGTGAAGTATTTAAGCAGCTAAATTTGCCTGCGGTGACACATGTCTCACTTTGTCAAGACAAAGGAGATATTGATAGGGTAAAAAGACCCTGGGATATCATAAGTGCTGGTCATAAAATTGGAACACCCGAGCCATTGTTCAGGGAACTTAAAGATGAAGAAGTGGAGTTCTATAGGAAGAAGTTTGCAGGAAGTCAAGCTGATAGGACTGTGCGGGCAGAGGCCGAAGCTGAAAATGTTGCTGGGCAGTTGAAGAAAACGAAACTTTCAATAATTGGAAAAGAGGAAATTAGTCTTAACCCCTAG
Predicted protein sequences of Glyma13g10200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g10200.1 sequence type=predicted peptide gene model=Glyma13g10200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAENVKGSKLPMEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHKEVYNWFNISFDEFGRTSCPQQTEVCHAIFKSIYDKWLSENTIQQLYCDSCERFLADRLVEGTCPTQGCKYDSARGDQCEKCGKLLNPTELKNPRCKVCEKPPRIRDTDHLFLELPLLKDRLEKYISEMSVVGGWSQNAIQTTNSWLREGLRSRCITRDLKWGVSVPHEKYSDKVFYVWFDAPIGYVSITSCYTRDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLATGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDVKDTSIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNCELLNNLGNFIHRVLSFIAKPAGRGYDSVIPSIPDDVSGESHIQTKIFADKVVAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQEAEFWRLYKENRPLCSLVMKTAVGIVYLLACLLEPFIPSFTREVFKQLNLPAVTHVSLCQDKGDIDRVKRPWDIISAGHKIGTPEPLFRELKDEEVEFYRKKFAGSQADRTVRAEAEAENVAGQLKKTKLSIIGKEEISLNP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
