SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G35470 | AT | Annotation by Michelle Graham. TAIR10: SPla/RYanodine receptor (SPRY) domain-containing protein | chr1:13051636-13054922 REVERSE LENGTH=465 | SoyBase | E_val: 2.00E-86 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1477 | KOG | SPRY domain-containing proteins | JGI | ISS | |
| PTHR12864 | Panther | RAN BINDING PROTEIN 9-RELATED | JGI | ISS | |
| PTHR12864:SF1 | Panther | RAN BINDING PROTEIN 9-RELATED | JGI | ISS | |
| PF00622 | PFAM | SPRY domain | JGI | ISS | |
| UniRef100_G7JP72 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ran-binding protein n=2 Tax=Medicago truncatula RepID=G7JP72_MEDTR | SoyBase | E_val: 1.00E-109 | ISS |
| UniRef100_UPI000233B0FE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B0FE related cluster n=1 Tax=unknown RepID=UPI000233B0FE | SoyBase | E_val: 0 | ISS |
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Glyma13g10171 not represented in the dataset |
Glyma13g10171 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g000100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g10171.1 sequence type=CDS gene model=Glyma13g10171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGAACAATTCGTAAGGAGATCTTGAAGGTCGTGCTTAGGGAGACGAATGAGAAAGAGGAAAAGAAAAAGGAGGCCGAGGCACCCTCCAAGCTGGACACTTCCAATAGTACGGGTGGTTTCGTGGCTGTGTCTACCGACATAATGAAGTACACCAGTGTGTATCCGGACAAGCCCGAACTCAATGTGATTTTGGCGGACGAGCCTGCTCCTTGGAAGAACTTGTTATACTATTTTGAGATTTACGTCAAAGACGCTGACTTTAAGGGCAAGATCGCCATTGGCTTCACTCTCGCATTATTTTTAATGAATATAGAGCCATGGTGGGAGGACCTTATCGCGGGTCATGAAAGTTCTCATGGTGTGCTTTACAGTGGCGATGAGGATACTGGCTCAACCTTTTTATCTGGTGATGTAATCGGCGCCGGAATTAACTACTCCACGAATGAATTCTTTTTCTGCAAAAATGGTGAACTTGTCCACTCAGTTCCCAATAACTTGAGTAACCGCGGCCTTTATCCAACGATTGCCGTCCTTAGCCAGCACGAAGAGATGCATGTTAACTTTGGGCAGAAACCATTTGCTTTTAACCTAAAAGATTTCGAAGCACGAGAAAGAAGGAAGCAACAACAGAAAATAGAGGAAATTTCCCTGTCACCACAGGTCACTTACAGCCTTATTCGCTCCTACCTGCTACACTCTGGCTATGAAGATACATTTAATTCATTTGATGTTGTTCCTTCTTCACCCATAACTGATGAGCAGACAAACACGTTAAATCACAGATCCACACTACGGCAGCTAATCATGAATGGGAACGTTGATGGTGCATTTGCTAAAGTGCATGAATGGTATCCACAGATTGTTGAGGTGGGCTCTCAGTTGTGCATATACCTGTTGCACTACTATGGTTGTTACAAGTTTGAACTGATATTTAAATTGGCATATGAAATGCCTCTCGAAGTTTTAGCCAATGCAGTAAATGCGTTCGTGTTGTCTACAGATCCTCACATGGAAGAAGCAAAGGATTGCTTGCACTCACCTCTTGAGAGGTTACTTAAGCAGCTCACTGCCTGCAAACGATATGAGGGAGAAGATTTCCTAGTCGAGAAAGAGTTTAGCAAGAGAGATTAG
>Glyma13g10171.1 sequence type=predicted peptide gene model=Glyma13g10171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGTIRKEILKVVLRETNEKEEKKKEAEAPSKLDTSNSTGGFVAVSTDIMKYTSVYPDKPELNVILADEPAPWKNLLYYFEIYVKDADFKGKIAIGFTLALFLMNIEPWWEDLIAGHESSHGVLYSGDEDTGSTFLSGDVIGAGINYSTNEFFFCKNGELVHSVPNNLSNRGLYPTIAVLSQHEEMHVNFGQKPFAFNLKDFEARERRKQQQKIEEISLSPQVTYSLIRSYLLHSGYEDTFNSFDVVPSSPITDEQTNTLNHRSTLRQLIMNGNVDGAFAKVHEWYPQIVEVGSQLCIYLLHYYGCYKFELIFKLAYEMPLEVLANAVNAFVLSTDPHMEEAKDCLHSPLERLLKQLTACKRYEGEDFLVEKEFSKRD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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