Glyma13g10140 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g10140

Feature Type:	gene_model
Chromosome:	Gm13
Start:	11711991
stop:	11712982
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47180	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:17372821-17373453 REVERSE LENGTH=210	SoyBase	E_val: 3.00E-37	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI		ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF33	Panther	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7J4X5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7J4X5_MEDTR	SoyBase	E_val: 1.00E-66	ISS
UniRef100_I1LXG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXG7_SOYBN	SoyBase	E_val: 2.00E-146	ISS

Expression Patterns of Glyma13g10140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g10140

Paralog	Evidence	Comments
Glyma14g24260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g10140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g031100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g10140

Limit To All Plant Sequences

>Glyma13g10140.2   sequence type=transcript   gene model=Glyma13g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAAGTTTTGTTCATCTTCAAAGAAATTTCCAAACTTGTGCTTTCATCCATAGATCTCCTCAAATACCTCTATCACATTCTTCTTTTCCCAAATCCCAACCCATCAATTCTTTTGGTTAATTAGTAATTACCCTTTTTTTGTCCTTCAATGGAACGTGAAGAAGGGAAACAACCTCCCCAAAAGACCCCATTACACAATCAACACGAGCAAGCTAATTCCAACAATTTTGTTCTAGAACATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGCGAGTCTTCCTTTGATGACAATGATTATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCGGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATTACAACAACGATGATGACAATGATGAAGATATGGAAGAAGATGACATCGATGTAGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGGGATTTTATAGGACAAGAGAAGAGAGGGTTGAATATGAAGAAGGTGAACCTTTGGTGGCAATTCAGTGCGAGCACCCTTATCACACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCAATATGTAACACTGAAATTTCAGCTCCCAAGATGGTTAGTTAAGAATATATACTTGGTTTTTAGATAGTTTAAAATTTATGCTTCCTTCATTTGTGCAATCTGAATTTGAAATAGTTAAAGGAAATAAAAGCTTAACTGGAGCTTAATTTGTAACATTGTAATCACAGAAATTTGATGTTTCAAGGTATGAAAGTGATTGGAAATCAAATTATACTTCGTACGTTATCAATTCCTTGTTTCATTTCGTGAATTTCCTGATGGATATGAAGAAATT

Coding sequences of Glyma13g10140

Limit To All Plant Sequences

>Glyma13g10140.1   sequence type=CDS   gene model=Glyma13g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGTGAAGAAGGGAAACAACCTCCCCAAAAGACCCCATTACACAATCAACACGAGCAAGCTAATTCCAACAATTTTGTTCTAGAACATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGCGAGTCTTCCTTTGATGACAATGATTATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCGGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATTACAACAACGATGATGACAATGATGAAGATATGGAAGAAGATGACATCGATGTAGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGGGATTTTATAGGACAAGAGAAGAGAGGGTTGTCAGCACATGAAATTTGTTCATGCTTGCATATTCACATTTTCCATTCTGCTGAAAACAAAAGTGGAATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAACCTTTGGTGGCAATTCAGTGCGAGCACCCTTATCACACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCAATATGTAACACTGAAATTTCAGCTCCCAAGATGGTTAGTTAA

>Glyma13g10140.2   sequence type=CDS   gene model=Glyma13g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGTGAAGAAGGGAAACAACCTCCCCAAAAGACCCCATTACACAATCAACACGAGCAAGCTAATTCCAACAATTTTGTTCTAGAACATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGCGAGTCTTCCTTTGATGACAATGATTATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCGGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATTACAACAACGATGATGACAATGATGAAGATATGGAAGAAGATGACATCGATGTAGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGGGATTTTATAGGACAAGAGAAGAGAGGGTTGAATATGAAGAAGGTGAACCTTTGGTGGCAATTCAGTGCGAGCACCCTTATCACACAGATTGCATAA

Predicted protein sequences of Glyma13g10140

Limit To All Plant Sequences

>Glyma13g10140.1   sequence type=predicted peptide   gene model=Glyma13g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEREEGKQPPQKTPLHNQHEQANSNNFVLEHNLQEQSGTFTTFASFESETEGESSFDDNDYDGDADFFLSQEFESELQFLESEGSNYNNDDDNDEDMEEDDIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLHIHIFHSAENKSGIDRCVICQVEYEEGEPLVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKMVS*

>Glyma13g10140.2   sequence type=predicted peptide   gene model=Glyma13g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEREEGKQPPQKTPLHNQHEQANSNNFVLEHNLQEQSGTFTTFASFESETEGESSFDDNDYDGDADFFLSQEFESELQFLESEGSNYNNDDDNDEDMEEDDIDVDELTYEELIELGDFIGQEKRGLNMKKVNLWWQFSASTLITQIA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain