Glyma13g10070 - SoyBase

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Report for Sequence Feature Glyma13g10070

Feature Type:	gene_model
Chromosome:	Gm13
Start:	11637771
stop:	11644690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g10070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09220	AT	Annotation by Michelle Graham. TAIR10: amino acid permease 2 \| chr5:2866867-2868863 FORWARD LENGTH=493	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0015800	GO-bp	Annotation by Michelle Graham. GO Biological Process: acidic amino acid transport	SoyBase	N/A	ISS
GO:0015804	GO-bp	Annotation by Michelle Graham. GO Biological Process: neutral amino acid transport	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_B9GU10	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid permease n=1 Tax=Populus trichocarpa RepID=B9GU10_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00017066AA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00017066AA related cluster n=1 Tax=unknown RepID=UPI00017066AA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g10070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g10070 not represented in the dataset	Glyma13g10070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g10070

Paralog	Evidence	Comments
Glyma14g24370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g10070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g031600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g10070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g10070

Limit To All Plant Sequences

>Glyma13g10070.3   sequence type=transcript   gene model=Glyma13g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGACTCTTGCTTTCAAAGGTAGCTATATTTCAGCAATTTATACCCCTAGACATATCTTCCAGTCTTCGTGGCTTAAATTTATCTCTACATTTAAGCACAAACTATTTTTTTTTTTATCCTTTCATAACCTACAAAGTTCTAATCGATGTTCTCAAAATGTTCACTATTGTTAAGGAGGACACGGACACATCTTGTTGTAGCTCCTCCCTCTTCTCCAAAACAAAGAACTGGTGATTCTTTCATATTTCCAAAAAGAATCATCAGATATATATACTCACAAAAATTGGTGGTATATTCGTCAACAACCACATAAAGAATCAAATTAAAGTTGAAAAGTTGCAATCTCTTAAGGCTTATTGAGGAAGAACATCAATAATCAGATGATAAGATAGATCGAATACACAGGAAATAACACAAGATGCACAACAAACAGAATTCCATATAAAAATAGAGGGATCTCCTTCTCTTATCCAGAGAAGCATATATAGAGAAAGAAAGAAGGCCCTGCCCTATATAGCTGAAGCAAGATGATGGAAAACGGTGGCAAACAGACATTTGAAGTCTCCAATGACACGCTTCAACGAGTAGGTTCCAAGAGCTTTGATGATGATGGCCGTCTCAAAAGAACTGGAACTATTTGGACTGCAAGTGCCCACATAATAACAGCTGTTATTGGTTCTGGGGTGCTATCTTTGGCTTGGGCTATTGCTCAGCTAGGTTGGATTGCTGGTCCTGTGGTGATGATTCTATTCTCTATTGTGACTTATTATACCTCAACTCTTCTAGCTACTTGTTACCGTTCTGGTGACCAACTCAGTGGCAAGAGAAACTACACTTACACACAAGCTGTTAGATCCTACCTTGGCGGTTTTTCGGTCAAGTTTTGTGGGTGGGTTCAGTATGCGAACCTTTTTGGAGTGGCAATTGGGTACACCATAGCAGCTTCCATAAGCATGATGGCAATCAAAAGGTCTAATTGTTATCATAGTAGCGGGGGGAAAAATCCATGCAAAATGAACAGCAATTGGTACATGATTTCATATGGTGTTTCGGAAATTATCTTCTCCCAAATTCCAGATTTCCATGAGTTGTGGTGGCTCTCTATTGTAGCTGCTGTCATGTCCTTCACATACTCATTCATTGGACTTGGCCTTGGTATTGGTAAAGTTATAGGAAACGGAAGAATTAAAGGAAGCCTAACTGGTGTAACTATTGGGACTGTGACAGAATCCCAAAAAATTTGGAGAACTTTCCAAGCGCTTGGAAACATAGCCTTTGCTTACTCCTACTCAATGATCCTTATTGAAATTCAGGACACAATCAAATCCCCTCCAGCAGAGTCAGAGACAATGTCCAAGGCTACTTTAATAAGTGTTTTGGTCACAACCGTTTTCTATATGCTATGTGGTTGCTTTGGCTATGCTTCTTTTGGAGATGCAAGTCCGGGAAACCTTCTCACTGGCTTTGGCTTCTATAACCCATTTTGGCTCATTGACATAGCCAATGCTGGCATTGTTATCCACCTTGTTGGTGCATACCAAGTTTACTGCCAACCCCTCTTCTCATTCGTCGAATCAAATGCGGCAGAAAGGTTCCCTAATAGTGATTTTATGAGCAGAGAGTTTGAAGTACCAATCCCTGGTTGCAAACCCTACAAGCTCAACCTCTTCAGGTTGGTTTGGAGGACACTTTTTGTGATTTTGTCAACTGTGATAGCCATGCTCCTACCATTCTTCAATGACATTGTAGGGCTTATTGGAGCCATTGGATTTTGGCCCCTCACTGTGTATTTACCAGTGGAGATGTATATAACTCAAACTAAGATACCAAAGTGGGGCATAAAATGGATAGGCCTACAAATGCTTAGTGTTGCATGCTTTGTAATTACTATATTAGCTGCAGCAGGTTCCATTGCTGGGGTTATTGATGATCTTAAAGTTTACAAGCCATTTGTTACCAGCTACTAATTCAATAGGATAATTACTTAGTGATCATGATCACCATTGTCAGAGATTTCATTAGCAACAAGAAAAAAAAAAGAAGGTAAATTGTTGCAAATTGAAATCAACAGGAAGGTGGTCTTACTTGTTTATTGCTTAGTAACCTTGTATCTTCTGTATCTTTGTTTTTTTTTGTTTGTGTGTGTGTGTTCTCTTACTTTGTAACTTGCTCTGTATCCCTAATTTGCAATGAGAAATGGAGGAAATGAAGCAGAGGCTTTCAAATTATCAAAGCTTT

Coding sequences of Glyma13g10070

Limit To All Plant Sequences

>Glyma13g10070.2   sequence type=CDS   gene model=Glyma13g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAAACGGTGGCAAACAGACATTTGAAGTCTCCAATGACACGCTTCAACGAGTAGGTTCCAAGAGCTTTGATGATGATGGCCGTCTCAAAAGAACTGGAACTATTTGGACTGCAAGTGCCCACATAATAACAGCTGTTATTGGTTCTGGGGTGCTATCTTTGGCTTGGGCTATTGCTCAGCTAGGTTGGATTGCTGGTCCTGTGGTGATGATTCTATTCTCTATTGTGACTTATTATACCTCAACTCTTCTAGCTACTTGTTACCGTTCTGGTGACCAACTCAGTGGCAAGAGAAACTACACTTACACACAAGCTGTTAGATCCTACCTTGGCGGTTTTTCGGTCAAGTTTTGTGGGTGGGTTCAGTATGCGAACCTTTTTGGAGTGGCAATTGGGTACACCATAGCAGCTTCCATAAGCATGATGGCAATCAAAAGGTCTAATTGTTATCATAGTAGCGGGGGGAAAAATCCATGCAAAATGAACAGCAATTGGTACATGATTTCATATGGTGTTTCGGAAATTATCTTCTCCCAAATTCCAGATTTCCATGAGTTGTGGTGGCTCTCTATTGTAGCTGCTGTCATGTCCTTCACATACTCATTCATTGGACTTGGCCTTGGTATTGGTAAAGTTATAGGAAACGGAAGAATTAAAGGAAGCCTAACTGGTGTAACTATTGGGACTGTGACAGAATCCCAAAAAATTTGGAGAACTTTCCAAGCGCTTGGAAACATAGCCTTTGCTTACTCCTACTCAATGATCCTTATTGAAATTCAGGACACAATCAAATCCCCTCCAGCAGAGTCAGAGACAATGTCCAAGGCTACTTTAATAAGTGTTTTGGTCACAACCGTTTTCTATATGCTATGTGGTTGCTTTGGCTATGCTTCTTTTGGAGATGCAAGTCCGGGAAACCTTCTCACTGGCTTTGGCTTCTATAACCCATTTTGGCTCATTGACATAGCCAATGCTGGCATTGTTATCCACCTTGTTGGTGCATACCAAGTTTACTGCCAACCCCTCTTCTCATTCGTCGAATCAAATGCGGCAGAAAGGTTCCCTAATAGTGATTTTATGAGCAGAGAGTTTGAAGTACCAATCCCTGGTTGCAAACCCTACAAGCTCAACCTCTTCAGGTTGGTTTGGAGGACACTTTTTGTGATTTTGTCAACTGTGATAGCCATGCTCCTACCATTCTTCAATGACATTGTAGGGCTTATTGGAGCCATTGGATTTTGGCCCCTCACTGTGTATTTACCAGTGGAGATGTATATAACTCAAACTAAGATACCAAAGTGGGGCATAAAATGGATAGGCCTACAAATGCTTAGTGTTGCATGCTTTGTAATTACTATATTAGCTGCAGCAGGTTCCATTGCTGGGGTTATTGATGATCTTAAAGTTTACAAGCCATTTGTTACCAGCTACTAA

>Glyma13g10070.3   sequence type=CDS   gene model=Glyma13g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAAACGGTGGCAAACAGACATTTGAAGTCTCCAATGACACGCTTCAACGAGTAGGTTCCAAGAGCTTTGATGATGATGGCCGTCTCAAAAGAACTGGAACTATTTGGACTGCAAGTGCCCACATAATAACAGCTGTTATTGGTTCTGGGGTGCTATCTTTGGCTTGGGCTATTGCTCAGCTAGGTTGGATTGCTGGTCCTGTGGTGATGATTCTATTCTCTATTGTGACTTATTATACCTCAACTCTTCTAGCTACTTGTTACCGTTCTGGTGACCAACTCAGTGGCAAGAGAAACTACACTTACACACAAGCTGTTAGATCCTACCTTGGCGGTTTTTCGGTCAAGTTTTGTGGGTGGGTTCAGTATGCGAACCTTTTTGGAGTGGCAATTGGGTACACCATAGCAGCTTCCATAAGCATGATGGCAATCAAAAGGTCTAATTGTTATCATAGTAGCGGGGGGAAAAATCCATGCAAAATGAACAGCAATTGGTACATGATTTCATATGGTGTTTCGGAAATTATCTTCTCCCAAATTCCAGATTTCCATGAGTTGTGGTGGCTCTCTATTGTAGCTGCTGTCATGTCCTTCACATACTCATTCATTGGACTTGGCCTTGGTATTGGTAAAGTTATAGGAAACGGAAGAATTAAAGGAAGCCTAACTGGTGTAACTATTGGGACTGTGACAGAATCCCAAAAAATTTGGAGAACTTTCCAAGCGCTTGGAAACATAGCCTTTGCTTACTCCTACTCAATGATCCTTATTGAAATTCAGGACACAATCAAATCCCCTCCAGCAGAGTCAGAGACAATGTCCAAGGCTACTTTAATAAGTGTTTTGGTCACAACCGTTTTCTATATGCTATGTGGTTGCTTTGGCTATGCTTCTTTTGGAGATGCAAGTCCGGGAAACCTTCTCACTGGCTTTGGCTTCTATAACCCATTTTGGCTCATTGACATAGCCAATGCTGGCATTGTTATCCACCTTGTTGGTGCATACCAAGTTTACTGCCAACCCCTCTTCTCATTCGTCGAATCAAATGCGGCAGAAAGGTTCCCTAATAGTGATTTTATGAGCAGAGAGTTTGAAGTACCAATCCCTGGTTGCAAACCCTACAAGCTCAACCTCTTCAGGTTGGTTTGGAGGACACTTTTTGTGATTTTGTCAACTGTGATAGCCATGCTCCTACCATTCTTCAATGACATTGTAGGGCTTATTGGAGCCATTGGATTTTGGCCCCTCACTGTGTATTTACCAGTGGAGATGTATATAACTCAAACTAAGATACCAAAGTGGGGCATAAAATGGATAGGCCTACAAATGCTTAGTGTTGCATGCTTTGTAATTACTATATTAGCTGCAGCAGGTTCCATTGCTGGGGTTATTGATGATCTTAAAGTTTACAAGCCATTTGTTACCAGCTACTAA

Predicted protein sequences of Glyma13g10070

Limit To All Plant Sequences

>Glyma13g10070.2   sequence type=predicted peptide   gene model=Glyma13g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMENGGKQTFEVSNDTLQRVGSKSFDDDGRLKRTGTIWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPVVMILFSIVTYYTSTLLATCYRSGDQLSGKRNYTYTQAVRSYLGGFSVKFCGWVQYANLFGVAIGYTIAASISMMAIKRSNCYHSSGGKNPCKMNSNWYMISYGVSEIIFSQIPDFHELWWLSIVAAVMSFTYSFIGLGLGIGKVIGNGRIKGSLTGVTIGTVTESQKIWRTFQALGNIAFAYSYSMILIEIQDTIKSPPAESETMSKATLISVLVTTVFYMLCGCFGYASFGDASPGNLLTGFGFYNPFWLIDIANAGIVIHLVGAYQVYCQPLFSFVESNAAERFPNSDFMSREFEVPIPGCKPYKLNLFRLVWRTLFVILSTVIAMLLPFFNDIVGLIGAIGFWPLTVYLPVEMYITQTKIPKWGIKWIGLQMLSVACFVITILAAAGSIAGVIDDLKVYKPFVTSY*

>Glyma13g10070.3   sequence type=predicted peptide   gene model=Glyma13g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMENGGKQTFEVSNDTLQRVGSKSFDDDGRLKRTGTIWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPVVMILFSIVTYYTSTLLATCYRSGDQLSGKRNYTYTQAVRSYLGGFSVKFCGWVQYANLFGVAIGYTIAASISMMAIKRSNCYHSSGGKNPCKMNSNWYMISYGVSEIIFSQIPDFHELWWLSIVAAVMSFTYSFIGLGLGIGKVIGNGRIKGSLTGVTIGTVTESQKIWRTFQALGNIAFAYSYSMILIEIQDTIKSPPAESETMSKATLISVLVTTVFYMLCGCFGYASFGDASPGNLLTGFGFYNPFWLIDIANAGIVIHLVGAYQVYCQPLFSFVESNAAERFPNSDFMSREFEVPIPGCKPYKLNLFRLVWRTLFVILSTVIAMLLPFFNDIVGLIGAIGFWPLTVYLPVEMYITQTKIPKWGIKWIGLQMLSVACFVITILAAAGSIAGVIDDLKVYKPFVTSY*

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