Glyma13g09980 - SoyBase

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Report for Sequence Feature Glyma13g09980

Feature Type:	gene_model
Chromosome:	Gm13
Start:	11546442
stop:	11548486
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g09980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13540	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 5 \| chr3:4420239-4421443 FORWARD LENGTH=249	SoyBase	E_val: 1.00E-83	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0010026	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome differentiation	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010214	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed coat development	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0048354	GO-bp	Annotation by Michelle Graham. GO Biological Process: mucilage biosynthetic process involved in seed coat development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_F5HQF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: R2R3 MYB transcription factor n=2 Tax=Glycine max RepID=F5HQF1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B0FB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B0FB related cluster n=1 Tax=unknown RepID=UPI000233B0FB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g09980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g09980

Paralog	Evidence	Comments
Glyma14g24500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g09980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g032200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g09980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g09980

Limit To All Plant Sequences

>Glyma13g09980.2   sequence type=CDS   gene model=Glyma13g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAATCCATCATCAACAACAACAACAGCAGCAACAACAACAACCAAGACCAAGGTGAAGAACAATAGTAACAACAACATTGGTAGCAACAACTCTCCATGTTGTAACAAGGTTGGGTTGAAGCGAGGTCCATGGACGCCAGAAGAAGACGAGGTATTAGCGAATTACATCAAGAAAGAAGGAGAAGGACGGTGGAGAACGCTCCCCAAGCGCGCCGGACTTCTCCGCTGCGGCAAGAGCTGCCGCCTTCGCTGGATGAACTACCTCCGCCCCTCCGTTAAGCGGGGCCACATCGCCCCCGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAAAACTATTGGAACACCCATCTAAGTAAAAAGCTTATTAGCCAAGGGATTGATCCAAGAACTCATAAGCCTCTTAACCCAGCATCCATTAATGTTCCTTCTTCTTCCACTACTTCTTCTAAACCTCTTCCAATGATCATTACCAACAACCATATTAACCCTGTTCATCACGATCTCACCAACATGTTTAATCAAGGAGTTCATCAAGTTCATCATCTGGGTCAACATCACCACCAACCTCCAGCTTCTAATCCCTATGATAACCATAACCCAGTACCTGCTGCTGCCACCGGTGATGTTTCTGCAATGGCTTTCATGGACAACAACAACGAGGATTGCAACGATGATATCAACATCAATTATTACTCCGACGATGTTTTTTCTTCCTTCCTCAACTCTTTGATCAACGATGATGCTTTTGCGGCGCAACAGCATCACGTGCAAACGGAAATCCCCACACCCAGTGAGCGTAGCATCATGAATCCACTTCCATGTGATGATCGTGTTGGTGGTCATCTGGGTTCAATCGCCACTGCTTCTGCAGCGCAAGGTTACGATGATGAACTTGGGGTTCTGTGGGAATCGCCACTCGTGAATGCTGCTACTTTCAGCCAACACGTTGACGATCACATCACCAAGAGGGTTCATGATCACCACAATCAATAG

Predicted protein sequences of Glyma13g09980

Limit To All Plant Sequences

>Glyma13g09980.2   sequence type=predicted peptide   gene model=Glyma13g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRNPSSTTTTAATTTTKTKVKNNSNNNIGSNNSPCCNKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPASINVPSSSTTSSKPLPMIITNNHINPVHHDLTNMFNQGVHQVHHLGQHHHQPPASNPYDNHNPVPAAATGDVSAMAFMDNNNEDCNDDININYYSDDVFSSFLNSLINDDAFAAQQHHVQTEIPTPSERSIMNPLPCDDRVGGHLGSIATASAAQGYDDELGVLWESPLVNAATFSQHVDDHITKRVHDHHNQ*

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