SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21850 | AT | Annotation by Michelle Graham. TAIR10: SKU5 similar 8 | chr1:7667803-7670530 REVERSE LENGTH=551 | SoyBase | E_val: 3.00E-65 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| PTHR11709 | Panther | MULTI-COPPER OXIDASE | JGI | ISS | |
| PTHR11709:SF11 | Panther | MULTICOPPER OXIDASE-RELATED | JGI | ISS | |
| PF00394 | PFAM | Multicopper oxidase | JGI | ISS | |
| UniRef100_B9T3G7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9T3G7_RICCO | SoyBase | E_val: 1.00E-115 | ISS |
| UniRef100_UPI000233B0F5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B0F5 related cluster n=1 Tax=unknown RepID=UPI000233B0F5 | SoyBase | E_val: 0 | ISS |
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Glyma13g09707 not represented in the dataset |
Glyma13g09707 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g033600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g09707.1 sequence type=CDS gene model=Glyma13g09707 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCCCCGGACCCCTTATAAATGCAACAACAAATGATAATATTCATGTCAATGTTTTCAATGATTTAGATGATCCCTTGCTGTTTACATGTTTTAGGAGTAGCACTAAACTTACACTCTATAGACATGGCAAGACATATTTGCTTAGGATATCAAACGTAGGGACAGCATGGAGCTTCAATTTCAGGATTCAAAATCATCAATTGGTTTTGGTTGAAACTAAAGGTTCTTATGTCAATCAAATAGAGTTGGAGTCTCTTGATGTTCATGTAGGCCAATCCTACTCAGTTCTTGTCACAGCAAACCAAAATGCTGCTGATTACTACATAGTAGCCTCTCCTAAACTGAGTAATGCCACAAATAATAACACTCTTGTTGGTGTTGCTGTGCTTCATTATGACAACTCTACCACACCGGCTAATGGGTCTCTTCCAAGTGGTCCAGATCCATTTGATCTGCAATTCTCCATCAACCAAGCAAAATCCATTAGGTGGAACCTCACCACTGGAGCTGCAAGGCCTAATCCCCAGGGAATGTTCCATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAATGCATCAACAACAACTATTGATGGGTTATCTCGCTACTCTGTCAACAATGTGTCTTTCTTGATCCTAGATACACCACTGAAACTAGCTGATTTCTTTTCCAATAGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTAGCTAGTGCATTACATAAAGGTTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGTATATAGCTTCTTTGTTGTTGGGTATAATCTCTATGTGAGGGTTTATGATGTTGATCCCAACCCTGCCAAGGAGAAGCCTCCTCCACAGAATCTCCTTCTATGTGGTTAG
>Glyma13g09707.1 sequence type=predicted peptide gene model=Glyma13g09707 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFPGPLINATTNDNIHVNVFNDLDDPLLFTCFRSSTKLTLYRHGKTYLLRISNVGTAWSFNFRIQNHQLVLVETKGSYVNQIELESLDVHVGQSYSVLVTANQNAADYYIVASPKLSNATNNNTLVGVAVLHYDNSTTPANGSLPSGPDPFDLQFSINQAKSIRWNLTTGAARPNPQGMFHVTNVTIIETFILNASTTTIDGLSRYSVNNVSFLILDTPLKLADFFSNRTGVYELDAFSKNTSNANAVRGVFVASALHKGWTEIVLENNLDIIDTWHLDVYSFFVVGYNLYVRVYDVDPNPAKEKPPPQNLLLCG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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