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Report for Sequence Feature Glyma13g09660

Feature Type:gene_model
Chromosome:Gm13
Start:11218757
stop:11223017
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g09660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20240AT Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr5:6829203-6831208 FORWARD LENGTH=208 SoyBaseE_val: 2.00E-82ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF134Panther SUBFAMILY NOT NAMED JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_C6TCS1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCS1_SOYBN SoyBaseE_val: 3.00E-151ISS
UniRef100_Q533S5UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS box protein PIa n=1 Tax=Lotus japonicus RepID=Q533S5_LOTJA SoyBaseE_val: 3.00E-136ISS

Expression Patterns of Glyma13g09660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g09660
ParalogEvidenceComments
Glyma14g24590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g09660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g034100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g09660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g09660
>Glyma13g09660.1   sequence type=CDS   gene model=Glyma13g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGGGTAAGATTGAGATCAAGAGGATAGAGAACTCAAGCAACAGGCAAGTTACATACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCCAAGGAAATCACTGTTCTATGTGATGCTCAAGTTTCGCTTATCATCTTTGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCTACCACGTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGTGATGATATCAACTCTCTTAACTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAAACTGGTCTAGTCAGTGTCCGCGAGAAACAGATGGATGTATACAGGATGCTCAGGAGAAACGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGAGGAAGGTGCGAGAGAAGTGGACAATGGGTTTGATCAAAGCGTAAGAGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAAAGGATCTAA
Predicted protein sequences of Glyma13g09660
>Glyma13g09660.1   sequence type=predicted peptide   gene model=Glyma13g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGDDINSLNYKELMALEDALETGLVSVREKQMDVYRMLRRNDKILEEENRELNFLWQQRLAEEGAREVDNGFDQSVRDYNSHMPFAFRVQPMQPNLQERI*






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