Glyma13g09650 - SoyBase

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Report for Sequence Feature Glyma13g09650

Feature Type:	gene_model
Chromosome:	Gm13
Start:	11183732
stop:	11186770
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g09650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77290	AT	Annotation by Michelle Graham. TAIR10: Glutathione S-transferase family protein \| chr1:29038917-29039815 FORWARD LENGTH=266	SoyBase	E_val: 3.00E-138	ISS
GO:0019338	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentachlorophenol catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG4420	KOG	Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1)	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF31	Panther	OS04G0435500 PROTEIN	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_B9S2T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ganglioside-induced differentiation-associated protein 1, 2 gdap, putative n=1 Tax=Ricinus communis RepID=B9S2T7_RICCO	SoyBase	E_val: 3.00E-148	ISS
UniRef100_I1LXD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXD9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g09650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g09650

Paralog	Evidence	Comments
Glyma14g24620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g09650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g034200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g09650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g09650

Limit To All Plant Sequences

>Glyma13g09650.1   sequence type=CDS   gene model=Glyma13g09650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTTATATCATCATCCGTTGGATTTGGACAGCCAGAGGGTGAGATTTGCATTGGAGGAGGAGGGTGTAGATTATACATCCCACCATGTCAATCCGATAACTGGCAAGAACTTGGATTCCTCTTTCTTCAAGATGAATCGCCATGGAAGGGTTCCGGTTTTCCAAAATGGCTCTCACATCATTTACAATACTATTGATATAATCCAGTACATAGAAAGAATTGCTGTGGTTTCCTCAGGGGTTGAGAGTATCAGTGCCAGTAGCAGGGAAGTGGTTGAATGGATGCAGAAGATACATGACTGGGACCCCAAGTTTTTCACACTTTCACACATACCTGAGAAATACCGCCTTTATGTTTCCAAGTTCATAAGGCAAGTGGCGATTGCTCGCATGTCAGAGTCGCCCGAATTAGCAAGTGATTACCATAGGAAGTTGAAAGAAGCCTATGAGACTGAAGAGAAATTGAAAGAAGCAGATGTTTTGAGAAGGAGCAAGGAGCATTTGGTTATACTGCTTGATGAGGTGGAGAGGCAGCTGAGTGAAACACCTTATTTGGCAGGTCAAGAGTTTACCATGGCAGATGTGATGCTCATTCCAGTATTAGTTCGTTTGAAACTCTTGGATTTAGAGAATGAGTACATAACTGGAAGGCCAAACATTGCTGAGTACTGGATTTTGGTTCAGCAAAGGCCTAGTTACAAAAAGGTGATTGGTAAGTACTTCAATGGTTGGAGAAAGCACAAAACACTTCTAAAAACATGGTTCTTAGTTCGTATTAGAAGTTTTCTGAAAAGGTACTAG

Predicted protein sequences of Glyma13g09650

Limit To All Plant Sequences

>Glyma13g09650.1   sequence type=predicted peptide   gene model=Glyma13g09650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLYHHPLDLDSQRVRFALEEEGVDYTSHHVNPITGKNLDSSFFKMNRHGRVPVFQNGSHIIYNTIDIIQYIERIAVVSSGVESISASSREVVEWMQKIHDWDPKFFTLSHIPEKYRLYVSKFIRQVAIARMSESPELASDYHRKLKEAYETEEKLKEADVLRRSKEHLVILLDEVERQLSETPYLAGQEFTMADVMLIPVLVRLKLLDLENEYITGRPNIAEYWILVQQRPSYKKVIGKYFNGWRKHKTLLKTWFLVRIRSFLKRY*

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