Glyma13g09601 - SoyBase

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Report for Sequence Feature Glyma13g09601

Feature Type:	gene_model
Chromosome:	Gm13
Start:	11061654
stop:	11066538
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g09601

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21560	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 76 Blast hits to 76 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 2; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:7555430-7556789 FORWARD LENGTH=325	SoyBase	E_val: 3.00E-19	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7IK21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Regulator of ribonuclease-like protein n=1 Tax=Medicago truncatula RepID=G7IK21_MEDTR	SoyBase	E_val: 9.00E-55	ISS
UniRef100_UPI000233B152	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B152 related cluster n=1 Tax=unknown RepID=UPI000233B152	SoyBase	E_val: 1.00E-121	ISS

Expression Patterns of Glyma13g09601

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g09601 not represented in the dataset	Glyma13g09601 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g09601

Paralog	Evidence	Comments
Glyma14g24745	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g09601 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g034700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g09601

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g09601

Limit To All Plant Sequences

>Glyma13g09601.2   sequence type=transcript   gene model=Glyma13g09601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCACTGTCACTGCCCACTCGAATAAAGATAAAAAAGAGTTATTGGTTCAGTTTTGGAACTTGAACTTGGATGTTACGGTACCTAAATTGCTTTTCACACCGTTTAAGGGTTTCATGGAAAGACCGTGAGTGTAAAGATTGGAGGGGTGCATGCATTGGGTGATAATCGGTGAAAAGATAGTGAGTAAGTATTCCTGTTTCAAAGGAGGACACTGCTATTGTTAAAGGAAAATGGGACCTGCTTTGGTCACGATTGACTTGGATGATTATGATGATGTGAGAGAGATTCCGAAACCGAAAGGTCCTAATTCTGAGGATTATAGGTTAGAAAGACGATGGAAGAGATTTGAACATTCAAGTTCAAATAAACGATTGAAGCAAAATCACAGTGACAGTGGTACAAGAACTGTGAAGAGTCATGGAAAAGTGGCAAGTTTAACAGTAAAAGAGGGTCATATGTCACATATGTCAGAGGATGAAGTGGATGAAGATTACAAATTCTTTTTGCTAACATATGATCCTCATATTGATGTTGTCTGTGATGGTGGTGTTGATGGTTCTGATGATGACATCAACATTGGACACAACAGTGACCATAATGATCATCTTTATAGGGAAGAAGAAAGCTTGAATAATAATCCCAAGTTAGATAAGGGTTCAAAACAAAGGGGTGAGACTGAAAATGAAAGAAATAAAAGGAGTGGTTCAGTAGGAAAACAAACAAGTGGCTCAATGAAAGCTAAGAAGAATTTGGAGGCTAAAAAAGGACTTAGTAAGAAAATGCCACGGGAAGATGTTTCTGGTGTCCCCAAGAACAATGGCCAGACTAATATGGAGTCAGTTGTTGCAGATGAAGATTACCAGATATTCCTGAATTCTTGTAGGGATGATTATATACCTAGTGAATTAATAGGAAAGCGATCAAGTGTTATGCAAAATTCACAAGTTCTTGATTATGCACCGAGTGAGGTTGATGAAGATTACTTACAATATTTGAATTCTGTTCTGATTGTTGATGGTGAGGTGGAGTTTATGTCTGAGAGGAATACCTCAAAGACGGACAACGTGGATGGTGACACTGACAGTAATTCCTCTGAACCAGATGTTATTCTTCTAGAACCTGATCAAATTCATGAAAACACTCCATTTGTTTCTTCCAGAACATTCGATTCATCTTGGTTCGAGACTGAAAAGAACCCCAAAGGCAACTGGCAATTATCTGCTTGCGATAATTCTCAGTTTAGGAGAAGACTTATGAATGATCTTCAAAGGCCATATGACCAAGAAGAATATGATAGACTTCTGTGTGAAGTACGTCAGAAAAAGCAAAAGGAACGTCATAGAGAAACACGTCATGGGGTGGTCAAGTCTTATCCCACAAGGGGTTTCCACAAATCATATCTCGACTTGTACCCTGATCTAGCTAAAGCAATTGCTGAATTCAAAAAACCGGAAAGGGTTTTGTTTCTCGTGCGTGGATTTGTTTTCTGGTTGCAAAATGTGACCCACGAAGGAATATTTCGGCCTTGGCTTGACAAGCATTGTCTGGACATTTTACGAAGAATGTAAAGATGGAATCTTGCCATCTCTAAGATTTGGAAGCAAGATTTTAACTAACACAGTCAACAAAGTTTACATATGTACAGTTTAAATCTATCTTTGAACTTTGACCTAATTGGAGAAAGAAAGATTGCTAGAGTTGTGGTTCTCATTAGGAGTTCTTTCATTTCTGTTATACCGTGGTTCTCTTTTGGTCCACTTTTTTATTGCACCATTTAGAATATGGTGATAATTGAGGGGGCTTAGGTGGTTAGCATATGCAGAAAAACAATATTATATGCTTCTTAAGGTAGTTGTTGAGGATTCATGCTTAAGTACCCTTATTATAGTGTTAAATTTCATGACTCTATACGGTATTAAATTTCAGCCAGTTTGCAATGGTTTCCCTTAAATATCTTTAGTTTATTATAGTGTTATTAGTTAGTCAGTGGCTCAGTGCAGTAGCTTGCCACTTTCTCTAATGTATTTGGCCAGAGATATTTTTTCCTATTT

Coding sequences of Glyma13g09601

Limit To All Plant Sequences

>Glyma13g09601.1   sequence type=CDS   gene model=Glyma13g09601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCTGCTTTGGTCACGATTGACTTGGATGATTATGATGATGTGAGAGAGATTCCGAAACCGAAAGGTCCTAATTCTGAGGATTATAGGTTAGAAAGACGATGGAAGAGATTTGAACATTCAAGTTCAAATAAACGATTGAAGCAAAATCACAGTGACAGTGGTACAAGAACTGTGAAGAGTCATGGAAAAGTGGCAAGTTTAACAGTAAAAGAGGGTCATATGTCACATATGTCAGAGGATGAAGTGGATGAAGATTACAAATTCTTTTTGCTAACATATGATCCTCATATTGATGTTGTCTGTGATGGTGGTGTTGATGGTTCTGATGATGACATCAACATTGGACACAACAGTGACCATAATGATCATCTTTATAGGGAAGAAGAAAGCTTGAATAATAATCCCAAGTTAGATAAGGGTTCAAAACAAAGGGGTGAGACTGAAAATGAAAGAAATAAAAGGAGTGGTTCAGTAGGAAAACAAACAAGTGGCTCAATGAAAGCTAAGAAGAATTTGGAGGCTAAAAAAGGACTTAGTAAGAAAATGCCACGGGAAGATGTTTCTGGTGTCCCCAAGAACAATGGCCAGACTAATATGGAGTCAGTTGTTGCAGATGAAGATTACCAGATATTCCTGAATTCTTGTAGGGATGATTATATACCTAGTGAATTAATAGGAAAGCGATCAAGTGTTATGCAAAATTCACAAGTTCTTGATTATGCACCGAGTGAGGTTGATGAAGATTACTTACAATATTTGAATTCTGTTCTGATTGTTGATGGTGAGGTGGAGTTTATGTCTGAGAGGAATACCTCAAAGACGGACAACGTGGATGGTGACACTGACAGTAATTCCTCTGAACCAGATGTTATTCTTCTAGAACCTGATCAAATTCATGAAAACACTCCATTTGTTTCTTCCAGAACATTCGATTCATCTTGGTTCGAGACTGAAAAGAACCCCAAAGGCAACTGGCAATTATCTGCTTGCGATAATTCTCAGTTTAGGAGAAGACTTATGAATGATCTTCAAAGGCCATATGACCAAGAAGAATATGATAGACTTCTGTGTGAAGTACGTCAGAAAAAGCAAAAGGAACGTCATAGAGAAACACGTCATGGGGTGGTCAAGTCTTATCCCACAAGGGGTTTCCACAAATCATATCTCGACTTGTACCCTGATCTAGCTAAAGCAATTGCTGAATTCAAAAAACCGGAAAGGGTTTTGTTTCTCGTGCGTGGATTTGTTTTCTGGTTGCAAAATGTGACCCACGAAGGAATATTTCGGCCTTGGCTTGACAAGCATTGTCTGGACATTTTACGAAGAATGTAA

>Glyma13g09601.2   sequence type=CDS   gene model=Glyma13g09601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCTGCTTTGGTCACGATTGACTTGGATGATTATGATGATGTGAGAGAGATTCCGAAACCGAAAGGTCCTAATTCTGAGGATTATAGGTTAGAAAGACGATGGAAGAGATTTGAACATTCAAGTTCAAATAAACGATTGAAGCAAAATCACAGTGACAGTGGTACAAGAACTGTGAAGAGTCATGGAAAAGTGGCAAGTTTAACAGTAAAAGAGGGTCATATGTCACATATGTCAGAGGATGAAGTGGATGAAGATTACAAATTCTTTTTGCTAACATATGATCCTCATATTGATGTTGTCTGTGATGGTGGTGTTGATGGTTCTGATGATGACATCAACATTGGACACAACAGTGACCATAATGATCATCTTTATAGGGAAGAAGAAAGCTTGAATAATAATCCCAAGTTAGATAAGGGTTCAAAACAAAGGGGTGAGACTGAAAATGAAAGAAATAAAAGGAGTGGTTCAGTAGGAAAACAAACAAGTGGCTCAATGAAAGCTAAGAAGAATTTGGAGGCTAAAAAAGGACTTAGTAAGAAAATGCCACGGGAAGATGTTTCTGGTGTCCCCAAGAACAATGGCCAGACTAATATGGAGTCAGTTGTTGCAGATGAAGATTACCAGATATTCCTGAATTCTTGTAGGGATGATTATATACCTAGTGAATTAATAGGAAAGCGATCAAGTGTTATGCAAAATTCACAAGTTCTTGATTATGCACCGAGTGAGGTTGATGAAGATTACTTACAATATTTGAATTCTGTTCTGATTGTTGATGGTGAGGTGGAGTTTATGTCTGAGAGGAATACCTCAAAGACGGACAACGTGGATGGTGACACTGACAGTAATTCCTCTGAACCAGATGTTATTCTTCTAGAACCTGATCAAATTCATGAAAACACTCCATTTGTTTCTTCCAGAACATTCGATTCATCTTGGTTCGAGACTGAAAAGAACCCCAAAGGCAACTGGCAATTATCTGCTTGCGATAATTCTCAGTTTAGGAGAAGACTTATGAATGATCTTCAAAGGCCATATGACCAAGAAGAATATGATAGACTTCTGTGTGAAGTACGTCAGAAAAAGCAAAAGGAACGTCATAGAGAAACACGTCATGGGGTGGTCAAGTCTTATCCCACAAGGGGTTTCCACAAATCATATCTCGACTTGTACCCTGATCTAGCTAAAGCAATTGCTGAATTCAAAAAACCGGAAAGGGTTTTGTTTCTCGTGCGTGGATTTGTTTTCTGGTTGCAAAATGTGACCCACGAAGGAATATTTCGGCCTTGGCTTGACAAGCATTGTCTGGACATTTTACGAAGAATGTAA

Predicted protein sequences of Glyma13g09601

Limit To All Plant Sequences

>Glyma13g09601.1   sequence type=predicted peptide   gene model=Glyma13g09601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPALVTIDLDDYDDVREIPKPKGPNSEDYRLERRWKRFEHSSSNKRLKQNHSDSGTRTVKSHGKVASLTVKEGHMSHMSEDEVDEDYKFFLLTYDPHIDVVCDGGVDGSDDDINIGHNSDHNDHLYREEESLNNNPKLDKGSKQRGETENERNKRSGSVGKQTSGSMKAKKNLEAKKGLSKKMPREDVSGVPKNNGQTNMESVVADEDYQIFLNSCRDDYIPSELIGKRSSVMQNSQVLDYAPSEVDEDYLQYLNSVLIVDGEVEFMSERNTSKTDNVDGDTDSNSSEPDVILLEPDQIHENTPFVSSRTFDSSWFETEKNPKGNWQLSACDNSQFRRRLMNDLQRPYDQEEYDRLLCEVRQKKQKERHRETRHGVVKSYPTRGFHKSYLDLYPDLAKAIAEFKKPERVLFLVRGFVFWLQNVTHEGIFRPWLDKHCLDILRRM*

>Glyma13g09601.2   sequence type=predicted peptide   gene model=Glyma13g09601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPALVTIDLDDYDDVREIPKPKGPNSEDYRLERRWKRFEHSSSNKRLKQNHSDSGTRTVKSHGKVASLTVKEGHMSHMSEDEVDEDYKFFLLTYDPHIDVVCDGGVDGSDDDINIGHNSDHNDHLYREEESLNNNPKLDKGSKQRGETENERNKRSGSVGKQTSGSMKAKKNLEAKKGLSKKMPREDVSGVPKNNGQTNMESVVADEDYQIFLNSCRDDYIPSELIGKRSSVMQNSQVLDYAPSEVDEDYLQYLNSVLIVDGEVEFMSERNTSKTDNVDGDTDSNSSEPDVILLEPDQIHENTPFVSSRTFDSSWFETEKNPKGNWQLSACDNSQFRRRLMNDLQRPYDQEEYDRLLCEVRQKKQKERHRETRHGVVKSYPTRGFHKSYLDLYPDLAKAIAEFKKPERVLFLVRGFVFWLQNVTHEGIFRPWLDKHCLDILRRM*

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