Glyma13g09520 - SoyBase

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Report for Sequence Feature Glyma13g09520

Feature Type:	gene_model
Chromosome:	Gm13
Start:	10929846
stop:	10936706
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g09520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77260	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:29023961-29026699 REVERSE LENGTH=655	SoyBase	E_val: 0	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF58	Panther	DEHYDRATION-RESPONSIVE PROTEIN-RELATED	JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_B9S2S8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2S8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LXD0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXD0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g09520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g09520

Paralog	Evidence	Comments
Glyma14g24900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g09520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g035300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g09520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g09520

Limit To All Plant Sequences

>Glyma13g09520.1   sequence type=CDS   gene model=Glyma13g09520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTCTCTAACGACGCTATGGCCTATGGATATTCTGAAAACCTCTTCTTTTGTTAGAATCACCGCCCTGTCACTCTTCTCCCTCACCCTCTTCCTCTTTCTCTTCACGCGCTTCTCTCCCACCTCTTATTCTTCCCTCACCTTCTTCTCCTCCACGCCGGAGCCACCCTCCCGGGAACAAGCACCACCACCACAACCAAATTCTCCTCCTCCTCCTCCGCCGCCGCCTCCACCGTCTCCTCCGCCGCCGGGAGTGAAAATATTCCGCGTGCCGCCGTTACCGCCGGTGGAGAGGATGGGGGTGTTGGACGGTAACGGCGTGATGACGGAGGATTTCAAGGTGGGGGAATTAGATCCCGGTTTCGAGGAAGATTCGCTAAACGACACCGTTTCGAGCGTTTCGAGTAAGGGGGGTGAGCGTGTGAGGGAGAAGGTTGAGAAGTATAAAACGTGTGATGTGAGAACGGTGGATTATGTGCCGTGTTTGGATAACGTGAAAGCGGTGAAGAAATACAAAGAGAGTTTGAGAGGGGAGAAGTACGAGCGGCATTGCAAAGGGATGGGCCTCAAGTGTCTGGTGCCCCGGCCCAAGGGATATCAGAGGCCCATCCCTTGGCCCAAAAGCCGAGATGAGGTTTGGTACAGTAATGTACCCCATACACGTCTAGTCGAGGATAAAGGTGGTCAAAATTGGATATTAATAAAGAGGGATAAATTTGTTTTTCCTGGTGGTGGAACTCAGTTTATACATGGTGCAGATAAATACCTGGATCAGATTTCTGAGATGGTTCCTGAAATTGCATTTGGTCACAACACCAGAGTTGCTTTAGACGTTGGCTGTGGAGTGGCAAGTTTTGGTGCCTTTTTGATGCAACGTAATGTGACCACTCTTTCAGTAGCACCAAAAGATGTTCATGAAAATCAGATTCAGTTTGCTCTTGAGCGAGGTGTGCCTGCCATGGTAGCGGTATTTGCTACGCACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGATGGAATTTTGCTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACTTTGTCTGGGCAGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGACAGAAATGGAGAACCTGACAGCTAGCATTTGTTGGGAACTTGTACGAAAGGAGGGCTATATTGCTATATGGCGGAAACCTTTGGACAATAGCTGCTACCTTGGTCGAGACATTGATGCGCATCCTCCATTATGTGAGTCCAATGATGATCCCGATAATGTTTGGTATGTTGGTCTTAAGGCATGCATCACTCCATTACCTAATAATGGATATGGAGCAAATGTTACAGAGTGGCCTTTGCGGCTTCATCAACCACCAGACAGGCTCCATAGCATCCAATTGGATGCCATTATATCCAGAGATGAACTCTTGAGGGCTGACTCAAAATATTGGTTTGAAATAATAGAAAGTTATGTACGGGCTTTCCGTTGGGAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGAGTTGCTGCTGCGCTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGTTGTTCCTGTCAGTGGATTTAATACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTGGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCACGCTGCAGGTCTTTTCTCTGTTGAGAAAAAGAGGCAAAAGTGTAACATCTCAACCATTATGCTTGAGATGGATCGGATGCTAAGACCGGGAGGACGAGTGTATATACGCGACACCACACTTGTTATAGGTGAGCTTCAAGAAATTGCAACTGCATTGGGATGGTCAACTACCATAAATGATGTAGGAGAGGGTCCCTATTCAAGCTGGAAGATATTAAGGTCTGATAAACGGTTCTGA

Predicted protein sequences of Glyma13g09520

Limit To All Plant Sequences

>Glyma13g09520.1   sequence type=predicted peptide   gene model=Glyma13g09520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSLTTLWPMDILKTSSFVRITALSLFSLTLFLFLFTRFSPTSYSSLTFFSSTPEPPSREQAPPPQPNSPPPPPPPPPPSPPPPGVKIFRVPPLPPVERMGVLDGNGVMTEDFKVGELDPGFEEDSLNDTVSSVSSKGGERVREKVEKYKTCDVRTVDYVPCLDNVKAVKKYKESLRGEKYERHCKGMGLKCLVPRPKGYQRPIPWPKSRDEVWYSNVPHTRLVEDKGGQNWILIKRDKFVFPGGGTQFIHGADKYLDQISEMVPEIAFGHNTRVALDVGCGVASFGAFLMQRNVTTLSVAPKDVHENQIQFALERGVPAMVAVFATHRLLFPSQAFDLIHCSRCRINWTRDDGILLLEANRLLRAGGYFVWAAQPVYKHEETLQEQWTEMENLTASICWELVRKEGYIAIWRKPLDNSCYLGRDIDAHPPLCESNDDPDNVWYVGLKACITPLPNNGYGANVTEWPLRLHQPPDRLHSIQLDAIISRDELLRADSKYWFEIIESYVRAFRWEDYNLRNVMDMRAGFGGVAAALHDLQIDCWVMNVVPVSGFNTLPVIYDRGLTGVMHDWCEPFDTYPRTYDLLHAAGLFSVEKKRQKCNISTIMLEMDRMLRPGGRVYIRDTTLVIGELQEIATALGWSTTINDVGEGPYSSWKILRSDKRF*

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